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Mercury in PDB 1cjx: Crystal Structure of Pseudomonas Fluorescens Hppd

Enzymatic activity of Crystal Structure of Pseudomonas Fluorescens Hppd

All present enzymatic activity of Crystal Structure of Pseudomonas Fluorescens Hppd:
1.13.11.27;

Protein crystallography data

The structure of Crystal Structure of Pseudomonas Fluorescens Hppd, PDB code: 1cjx was solved by L.Serre, A.Sailland, D.Sy, P.Boudec, A.Rolland, E.Pebay-Peroulla, C.Cohen-Addad, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.40
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 79.590, 142.750, 159.440, 90.00, 90.00, 90.00
R / Rfree (%) 21.9 / 27.6

Other elements in 1cjx:

The structure of Crystal Structure of Pseudomonas Fluorescens Hppd also contains other interesting chemical elements:

Iron (Fe) 4 atoms

Mercury Binding Sites:

The binding sites of Mercury atom in the Crystal Structure of Pseudomonas Fluorescens Hppd (pdb code 1cjx). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 4 binding sites of Mercury where determined in the Crystal Structure of Pseudomonas Fluorescens Hppd, PDB code: 1cjx:
Jump to Mercury binding site number: 1; 2; 3; 4;

Mercury binding site 1 out of 4 in 1cjx

Go back to Mercury Binding Sites List in 1cjx
Mercury binding site 1 out of 4 in the Crystal Structure of Pseudomonas Fluorescens Hppd


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Crystal Structure of Pseudomonas Fluorescens Hppd within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg630

b:21.9
occ:1.00
 HG A:EMC630 0.0 21.9 1.0
C1 A:EMC630 2.0 24.5 1.0
SG A:CYS78 2.5 18.8 1.0
C2 A:EMC630 2.9 22.3 1.0
O A:CYS78 2.9 18.9 1.0
CB A:CYS78 3.3 16.3 1.0
OE1 A:GLU17 3.4 27.9 1.0
CD A:GLU17 3.4 23.0 1.0
C A:CYS78 3.4 20.2 1.0
CB A:ALA66 3.5 9.5 1.0
OE2 A:GLU17 3.7 26.5 1.0
CG A:GLU17 3.9 21.4 1.0
N A:GLY79 4.0 19.9 1.0
CA A:CYS78 4.0 19.9 1.0
CA A:ALA66 4.2 21.0 1.0
CA A:GLY79 4.2 21.1 1.0
CB A:GLU17 4.4 17.4 1.0
ND2 A:ASN59 4.4 17.3 1.0
N A:ALA66 4.6 20.5 1.0
CD A:PRO123 4.6 22.0 1.0
OH A:TYR125 4.6 19.6 1.0
N A:CYS78 5.0 19.8 1.0

Mercury binding site 2 out of 4 in 1cjx

Go back to Mercury Binding Sites List in 1cjx
Mercury binding site 2 out of 4 in the Crystal Structure of Pseudomonas Fluorescens Hppd


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of Crystal Structure of Pseudomonas Fluorescens Hppd within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg630

b:23.2
occ:1.00
 HG B:EMC630 0.0 23.2 1.0
C1 B:EMC630 2.0 25.4 1.0
SG B:CYS78 2.5 19.6 1.0
C2 B:EMC630 2.9 24.0 1.0
O B:CYS78 3.0 24.2 1.0
CB B:CYS78 3.2 16.3 1.0
OE1 B:GLU17 3.5 16.3 1.0
CD B:GLU17 3.5 17.9 1.0
C B:CYS78 3.5 22.6 1.0
CB B:ALA66 3.6 14.1 1.0
OE2 B:GLU17 3.7 19.4 1.0
CG B:GLU17 4.0 20.4 1.0
CA B:CYS78 4.0 21.6 1.0
CA B:ALA66 4.1 20.4 1.0
N B:GLY79 4.1 21.9 1.0
CA B:GLY79 4.3 20.6 1.0
CB B:GLU17 4.3 20.3 1.0
N B:ALA66 4.5 23.1 1.0
ND2 B:ASN59 4.6 12.4 1.0
CD B:PRO123 4.7 18.8 1.0
OH B:TYR125 4.8 16.9 1.0
N B:CYS78 4.9 19.9 1.0

Mercury binding site 3 out of 4 in 1cjx

Go back to Mercury Binding Sites List in 1cjx
Mercury binding site 3 out of 4 in the Crystal Structure of Pseudomonas Fluorescens Hppd


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 3 of Crystal Structure of Pseudomonas Fluorescens Hppd within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Hg630

b:29.0
occ:1.00
 HG C:EMC630 0.0 29.0 1.0
C1 C:EMC630 2.0 28.7 1.0
SG C:CYS78 2.5 27.8 1.0
C2 C:EMC630 2.9 26.2 1.0
O C:CYS78 2.9 21.6 1.0
OE1 C:GLU17 3.2 25.5 1.0
CD C:GLU17 3.3 21.4 1.0
CB C:CYS78 3.3 20.6 1.0
C C:CYS78 3.5 23.1 1.0
OE2 C:GLU17 3.5 18.8 1.0
O C:HOH762 3.5 29.7 1.0
CB C:ALA66 3.6 18.4 1.0
CG C:GLU17 3.9 17.4 1.0
CA C:ALA66 4.1 26.8 1.0
CA C:CYS78 4.1 23.2 1.0
N C:GLY79 4.1 23.6 1.0
CB C:GLU17 4.4 24.6 1.0
CA C:GLY79 4.4 22.6 1.0
N C:ALA66 4.5 24.9 1.0
ND2 C:ASN59 4.5 19.2 1.0
CD C:PRO123 4.8 24.6 1.0
OH C:TYR125 4.8 23.0 1.0
CB C:ASN59 5.0 21.7 1.0

Mercury binding site 4 out of 4 in 1cjx

Go back to Mercury Binding Sites List in 1cjx
Mercury binding site 4 out of 4 in the Crystal Structure of Pseudomonas Fluorescens Hppd


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 4 of Crystal Structure of Pseudomonas Fluorescens Hppd within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Hg630

b:25.7
occ:1.00
 HG D:EMC630 0.0 25.7 1.0
C1 D:EMC630 2.0 27.5 1.0
SG D:CYS78 2.5 21.9 1.0
C2 D:EMC630 2.9 25.2 1.0
O D:CYS78 3.1 18.7 1.0
CB D:CYS78 3.3 14.6 1.0
OE1 D:GLU17 3.3 31.7 1.0
CD D:GLU17 3.4 25.1 1.0
C D:CYS78 3.6 19.2 1.0
OE2 D:GLU17 3.6 22.0 1.0
CB D:ALA66 3.7 21.5 1.0
CG D:GLU17 4.0 22.9 1.0
N D:GLY79 4.1 21.9 1.0
CA D:ALA66 4.1 24.7 1.0
CA D:CYS78 4.1 20.1 1.0
CA D:GLY79 4.4 22.5 1.0
CB D:GLU17 4.4 20.6 1.0
ND2 D:ASN59 4.5 20.6 1.0
N D:ALA66 4.5 22.7 1.0
CD D:PRO123 4.8 24.0 1.0
OH D:TYR125 4.9 18.8 1.0

Reference:

L.Serre, A.Sailland, D.Sy, P.Boudec, A.Rolland, E.Pebay-Peyroula, C.Cohen-Addad. Crystal Structure of Pseudomonas Fluorescens 4-Hydroxyphenylpyruvate Dioxygenase: An Enzyme Involved in the Tyrosine Degradation Pathway. Structure Fold.Des. V. 7 977 1999.
ISSN: ISSN 0969-2126
PubMed: 10467142
DOI: 10.1016/S0969-2126(99)80124-5
Page generated: Sat Aug 10 23:23:52 2024

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