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Mercury in PDB 1dbu: Crystal Structure of Cysteinyl-Trna(Pro) Deacylase Protein From H. Influenzae (HI1434)

Protein crystallography data

The structure of Crystal Structure of Cysteinyl-Trna(Pro) Deacylase Protein From H. Influenzae (HI1434), PDB code: 1dbu was solved by H.Zhang, K.Huang, Z.Li, O.Herzberg, Structure 2 Functionproject (S2F), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.80
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 102.570, 42.490, 32.540, 90.00, 104.17, 90.00
R / Rfree (%) 19.3 / 26.2

Mercury Binding Sites:

The binding sites of Mercury atom in the Crystal Structure of Cysteinyl-Trna(Pro) Deacylase Protein From H. Influenzae (HI1434) (pdb code 1dbu). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total only one binding site of Mercury was determined in the Crystal Structure of Cysteinyl-Trna(Pro) Deacylase Protein From H. Influenzae (HI1434), PDB code: 1dbu:

Mercury binding site 1 out of 1 in 1dbu

Go back to Mercury Binding Sites List in 1dbu
Mercury binding site 1 out of 1 in the Crystal Structure of Cysteinyl-Trna(Pro) Deacylase Protein From H. Influenzae (HI1434)


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Crystal Structure of Cysteinyl-Trna(Pro) Deacylase Protein From H. Influenzae (HI1434) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg260

b:35.7
occ:1.00
O A:HOH415 1.8 12.4 1.0
SG A:CYS61 2.6 10.0 0.5
O A:HOH418 2.7 48.7 1.0
OG1 A:THR114 2.8 19.6 1.0
SG A:CYS61 3.0 22.9 0.5
CB A:CYS61 3.1 17.6 0.5
CB A:CYS61 3.1 13.3 0.5
NE2 A:GLN108 3.4 20.2 1.0
OE1 A:GLN108 3.5 23.2 1.0
CD A:GLN108 3.5 23.5 1.0
O A:PRO105 3.6 21.3 1.0
CB A:THR114 4.0 19.3 1.0
CG2 A:THR114 4.1 19.3 1.0
CA A:PRO105 4.2 18.0 1.0
C A:PRO105 4.3 18.8 1.0
CG A:GLN108 4.5 22.3 1.0
O A:HOH302 4.5 29.6 1.0
CB A:PRO105 4.6 18.9 1.0
CG2 A:VAL112 4.6 21.8 1.0
CD1 A:LEU148 4.6 19.2 1.0
CA A:CYS61 4.6 15.5 1.0
O A:VAL112 4.9 25.0 1.0
CA A:THR114 5.0 17.6 1.0

Reference:

H.Zhang, K.Huang, Z.Li, L.Banerjei, K.E.Fisher, N.V.Grishin, E.Eisenstein, O.Herzberg. Crystal Structure of Ybak Protein From Haemophilus Influenzae (HI1434) at 1.8 A Resolution: Functional Implications. Proteins V. 40 86 2000.
ISSN: ISSN 0887-3585
PubMed: 10813833
DOI: 10.1002/(SICI)1097-0134(20000701)40:1<86::AID-PROT100>3.0.CO;2-Y
Page generated: Wed Oct 28 18:39:05 2020

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