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Mercury in PDB 1e7z: Crystal Structure of the EMAP2/Rna Binding Domain of the P43 Protein From Human Aminoacyl-Trna Synthetase Complex

Protein crystallography data

The structure of Crystal Structure of the EMAP2/Rna Binding Domain of the P43 Protein From Human Aminoacyl-Trna Synthetase Complex, PDB code: 1e7z was solved by S.Pasqualato, P.Kerjan, L.Renault, J.Menetrey, M.Mirande, J.Cherfils, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.48 / 2.05
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 36.141, 53.938, 41.371, 90.00, 111.92, 90.00
R / Rfree (%) 22.1 / 27.2

Mercury Binding Sites:

The binding sites of Mercury atom in the Crystal Structure of the EMAP2/Rna Binding Domain of the P43 Protein From Human Aminoacyl-Trna Synthetase Complex (pdb code 1e7z). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 2 binding sites of Mercury where determined in the Crystal Structure of the EMAP2/Rna Binding Domain of the P43 Protein From Human Aminoacyl-Trna Synthetase Complex, PDB code: 1e7z:
Jump to Mercury binding site number: 1; 2;

Mercury binding site 1 out of 2 in 1e7z

Go back to Mercury Binding Sites List in 1e7z
Mercury binding site 1 out of 2 in the Crystal Structure of the EMAP2/Rna Binding Domain of the P43 Protein From Human Aminoacyl-Trna Synthetase Complex


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Crystal Structure of the EMAP2/Rna Binding Domain of the P43 Protein From Human Aminoacyl-Trna Synthetase Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg500

b:44.3
occ:0.45
SG A:CYS161 2.4 27.8 1.0
OD1 A:ASN204 3.0 28.7 1.0
SD A:MET206 3.2 33.0 1.0
O A:HOH2043 3.2 64.8 1.0
O A:ASN204 3.3 29.1 1.0
CB A:CYS161 3.4 24.7 1.0
CG A:MET206 3.6 30.0 1.0
CG A:ASN204 3.8 28.5 1.0
C A:ASN204 3.8 27.2 1.0
CA A:ASN204 4.3 26.7 1.0
CA A:CYS161 4.3 23.3 1.0
O A:HOH2074 4.3 57.2 1.0
N A:MET206 4.4 24.5 1.0
ND2 A:ASN204 4.4 27.9 1.0
C A:ARG205 4.5 26.4 1.0
O A:HOH2037 4.5 45.1 1.0
N A:ARG205 4.5 28.2 1.0
CB A:ASN204 4.6 27.4 1.0
CA A:MET206 4.6 25.2 1.0
CB A:MET206 4.7 28.7 1.0
O A:ARG205 4.7 23.4 1.0
CE A:MET206 4.9 30.6 1.0
CA A:ARG205 4.9 27.1 1.0

Mercury binding site 2 out of 2 in 1e7z

Go back to Mercury Binding Sites List in 1e7z
Mercury binding site 2 out of 2 in the Crystal Structure of the EMAP2/Rna Binding Domain of the P43 Protein From Human Aminoacyl-Trna Synthetase Complex


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of Crystal Structure of the EMAP2/Rna Binding Domain of the P43 Protein From Human Aminoacyl-Trna Synthetase Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg501

b:46.2
occ:0.30
SG A:CYS284 2.7 28.6 1.0
O A:GLU283 3.0 32.5 1.0
C A:GLU283 3.1 31.6 1.0
CB A:CYS284 3.3 26.4 1.0
O A:HOH2112 3.5 45.8 1.0
NH2 A:ARG302 3.6 32.9 1.0
N A:CYS284 3.6 30.0 1.0
CA A:GLU283 3.6 32.2 1.0
CA A:CYS284 4.1 27.5 1.0
O A:ASP282 4.1 29.1 1.0
CZ A:ARG302 4.5 34.8 1.0
CB A:GLU283 4.6 33.2 1.0
N A:GLU283 4.6 31.1 1.0
C A:ASP282 4.8 30.4 1.0
NH1 A:ARG302 4.9 34.9 1.0

Reference:

L.Renault, P.Kerjan, S.Pasqualato, J.Menetrey, J.C.Robinson, S.Kawaguchi, D.G.Vassylyev, S.Yokoyama, M.Mirande, J.Cherfils. Structure of the Emapii Domain of Human Aminoacyl- Trna Synthetase Complex Reveals Evolutionary Dimeric Mimicry Embo J. V. 20 570 2001.
ISSN: ISSN 0261-4189
PubMed: 11157763
DOI: 10.1093/EMBOJ/20.3.570
Page generated: Sun Dec 13 19:02:33 2020

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