Mercury in PDB 1fl9: The Yjee Protein

The structure of The Yjee Protein, PDB code: 1fl9 was solved by A.Teplyakov, G.L.Gilliland, Structure 2 Function Project (S2F), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	10.00 / 2.50
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	76.400, 73.000, 96.800, 90.00, 110.20, 90.00
R / Rfree (%)	22 / 28.5

The binding sites of Mercury atom in the The Yjee Protein (pdb code 1fl9). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 3 binding sites of Mercury where determined in the The Yjee Protein, PDB code: 1fl9:
Jump to Mercury binding site number: 1; 2; 3;

Mercury binding site 1 out of 3 in the The Yjee Protein


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of The Yjee Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Hg200 b:45.4 occ:0.40 SG A:CYS110 1.9 31.1 1.0 CE1 A:PHE104 2.3 47.2 1.0 CB A:CYS110 2.3 39.9 1.0 CZ A:PHE104 2.9 47.5 1.0 CD1 A:PHE104 3.1 55.0 1.0 O A:TYR103 3.7 48.6 1.0 CA A:CYS110 3.8 40.6 1.0 CE2 A:PHE104 3.9 52.9 1.0 CG A:PHE104 4.1 59.0 1.0 CD1 A:ILE112 4.3 26.0 1.0 CD2 A:PHE104 4.4 58.1 1.0 SD A:MET35 4.4 58.4 1.0 N A:CYS110 4.5 39.2 1.0 C A:TYR103 4.6 49.8 1.0 C A:CYS110 4.8 40.2 1.0 CB A:TYR103 4.8 42.8 1.0 CE1 A:PHE84 5.0 24.8 1.0

Mercury binding site 2 out of 3 in the The Yjee Protein


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of The Yjee Protein within 5.0Å range: probe atom residue distance (Å) B Occ B:Hg200 b:37.1 occ:0.40 CE1 B:PHE104 1.8 26.8 1.0 SG B:CYS110 1.9 6.0 1.0 CD1 B:PHE104 2.1 36.4 1.0 CB B:CYS110 2.6 23.7 1.0 CE B:MET35 2.8 6.1 1.0 CZ B:PHE104 2.8 38.3 1.0 CZ B:PHE84 2.9 32.9 1.0 CG B:PHE104 3.2 48.6 1.0 CE2 B:PHE84 3.6 32.4 1.0 CE2 B:PHE104 3.7 48.8 1.0 CD2 B:PHE104 3.9 52.4 1.0 CE1 B:PHE84 4.0 35.9 1.0 CA B:CYS110 4.0 28.3 1.0 CA B:PHE104 4.2 52.3 1.0 CD1 B:ILE112 4.2 31.5 1.0 CB B:PHE104 4.3 52.9 1.0 O B:TYR103 4.4 56.0 1.0 SD B:MET35 4.5 11.7 1.0 N B:PHE104 4.5 53.0 1.0 C B:TYR103 4.6 53.4 1.0 CG1 B:ILE112 4.8 31.9 1.0 N B:CYS110 4.9 27.8 1.0 CD2 B:PHE84 4.9 34.8 1.0 CB B:TYR103 4.9 50.6 1.0 CG B:MET35 5.0 17.9 1.0 C B:CYS110 5.0 29.5 1.0

Mercury binding site 3 out of 3 in the The Yjee Protein


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 3 of The Yjee Protein within 5.0Å range: probe atom residue distance (Å) B Occ C:Hg200 b:50.1 occ:0.40 SG C:CYS110 1.2 8.8 1.0 CD1 C:PHE104 2.0 38.0 1.0 CE1 C:PHE104 2.1 32.8 1.0 CB C:CYS110 2.4 6.0 1.0 O C:TYR103 2.8 41.9 1.0 CG C:PHE104 3.0 50.2 1.0 CZ C:PHE104 3.0 41.1 1.0 C C:TYR103 3.5 45.1 1.0 CE C:MET35 3.7 33.6 1.0 CD2 C:PHE104 3.7 53.6 1.0 SD C:MET35 3.7 40.7 1.0 CE2 C:PHE104 3.7 48.5 1.0 CA C:CYS110 3.8 25.1 1.0 CA C:PHE104 3.8 55.5 1.0 CB C:PHE104 3.9 56.8 1.0 N C:PHE104 3.9 51.0 1.0 CD2 C:TYR82 4.2 40.3 1.0 O C:ILE34 4.4 46.6 1.0 CB C:TYR103 4.5 38.3 1.0 CA C:TYR103 4.6 43.3 1.0 N C:CYS110 4.6 25.8 1.0 CB C:TYR82 4.7 38.8 1.0 CB C:SER108 4.7 41.0 1.0 C C:CYS110 4.8 25.5 1.0 CG C:TYR82 4.8 39.3 1.0 CE1 C:PHE84 4.9 27.8 1.0 CD C:PRO123 4.9 51.2 1.0 CZ C:PHE84 4.9 26.9 1.0

A.Teplyakov, G.Obmolova, M.Tordova, N.Thanki, N.Bonander, E.Eisenstein, A.J.Howard, G.L.Gilliland. Crystal Structure of the Yjee Protein From Haemophilus Influenzae: A Putative Atpase Involved in Cell Wall Synthesis Proteins V. 48 220 2002.
ISSN: ISSN 0887-3585
PubMed: 12112691
DOI: 10.1002/PROT.10114