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Mercury in PDB 1fl9: The Yjee Protein

Protein crystallography data

The structure of The Yjee Protein, PDB code: 1fl9 was solved by A.Teplyakov, G.L.Gilliland, Structure 2 Function Project (S2F), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 2.50
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 76.400, 73.000, 96.800, 90.00, 110.20, 90.00
R / Rfree (%) 22 / 28.5

Mercury Binding Sites:

The binding sites of Mercury atom in the The Yjee Protein (pdb code 1fl9). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 3 binding sites of Mercury where determined in the The Yjee Protein, PDB code: 1fl9:
Jump to Mercury binding site number: 1; 2; 3;

Mercury binding site 1 out of 3 in 1fl9

Go back to Mercury Binding Sites List in 1fl9
Mercury binding site 1 out of 3 in the The Yjee Protein


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of The Yjee Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg200

b:45.4
occ:0.40
SG A:CYS110 1.9 31.1 1.0
CE1 A:PHE104 2.3 47.2 1.0
CB A:CYS110 2.3 39.9 1.0
CZ A:PHE104 2.9 47.5 1.0
CD1 A:PHE104 3.1 55.0 1.0
O A:TYR103 3.7 48.6 1.0
CA A:CYS110 3.8 40.6 1.0
CE2 A:PHE104 3.9 52.9 1.0
CG A:PHE104 4.1 59.0 1.0
CD1 A:ILE112 4.3 26.0 1.0
CD2 A:PHE104 4.4 58.1 1.0
SD A:MET35 4.4 58.4 1.0
N A:CYS110 4.5 39.2 1.0
C A:TYR103 4.6 49.8 1.0
C A:CYS110 4.8 40.2 1.0
CB A:TYR103 4.8 42.8 1.0
CE1 A:PHE84 5.0 24.8 1.0

Mercury binding site 2 out of 3 in 1fl9

Go back to Mercury Binding Sites List in 1fl9
Mercury binding site 2 out of 3 in the The Yjee Protein


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of The Yjee Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg200

b:37.1
occ:0.40
CE1 B:PHE104 1.8 26.8 1.0
SG B:CYS110 1.9 6.0 1.0
CD1 B:PHE104 2.1 36.4 1.0
CB B:CYS110 2.6 23.7 1.0
CE B:MET35 2.8 6.1 1.0
CZ B:PHE104 2.8 38.3 1.0
CZ B:PHE84 2.9 32.9 1.0
CG B:PHE104 3.2 48.6 1.0
CE2 B:PHE84 3.6 32.4 1.0
CE2 B:PHE104 3.7 48.8 1.0
CD2 B:PHE104 3.9 52.4 1.0
CE1 B:PHE84 4.0 35.9 1.0
CA B:CYS110 4.0 28.3 1.0
CA B:PHE104 4.2 52.3 1.0
CD1 B:ILE112 4.2 31.5 1.0
CB B:PHE104 4.3 52.9 1.0
O B:TYR103 4.4 56.0 1.0
SD B:MET35 4.5 11.7 1.0
N B:PHE104 4.5 53.0 1.0
C B:TYR103 4.6 53.4 1.0
CG1 B:ILE112 4.8 31.9 1.0
N B:CYS110 4.9 27.8 1.0
CD2 B:PHE84 4.9 34.8 1.0
CB B:TYR103 4.9 50.6 1.0
CG B:MET35 5.0 17.9 1.0
C B:CYS110 5.0 29.5 1.0

Mercury binding site 3 out of 3 in 1fl9

Go back to Mercury Binding Sites List in 1fl9
Mercury binding site 3 out of 3 in the The Yjee Protein


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 3 of The Yjee Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Hg200

b:50.1
occ:0.40
SG C:CYS110 1.2 8.8 1.0
CD1 C:PHE104 2.0 38.0 1.0
CE1 C:PHE104 2.1 32.8 1.0
CB C:CYS110 2.4 6.0 1.0
O C:TYR103 2.8 41.9 1.0
CG C:PHE104 3.0 50.2 1.0
CZ C:PHE104 3.0 41.1 1.0
C C:TYR103 3.5 45.1 1.0
CE C:MET35 3.7 33.6 1.0
CD2 C:PHE104 3.7 53.6 1.0
SD C:MET35 3.7 40.7 1.0
CE2 C:PHE104 3.7 48.5 1.0
CA C:CYS110 3.8 25.1 1.0
CA C:PHE104 3.8 55.5 1.0
CB C:PHE104 3.9 56.8 1.0
N C:PHE104 3.9 51.0 1.0
CD2 C:TYR82 4.2 40.3 1.0
O C:ILE34 4.4 46.6 1.0
CB C:TYR103 4.5 38.3 1.0
CA C:TYR103 4.6 43.3 1.0
N C:CYS110 4.6 25.8 1.0
CB C:TYR82 4.7 38.8 1.0
CB C:SER108 4.7 41.0 1.0
C C:CYS110 4.8 25.5 1.0
CG C:TYR82 4.8 39.3 1.0
CE1 C:PHE84 4.9 27.8 1.0
CD C:PRO123 4.9 51.2 1.0
CZ C:PHE84 4.9 26.9 1.0

Reference:

A.Teplyakov, G.Obmolova, M.Tordova, N.Thanki, N.Bonander, E.Eisenstein, A.J.Howard, G.L.Gilliland. Crystal Structure of the Yjee Protein From Haemophilus Influenzae: A Putative Atpase Involved in Cell Wall Synthesis Proteins V. 48 220 2002.
ISSN: ISSN 0887-3585
PubMed: 12112691
DOI: 10.1002/PROT.10114
Page generated: Wed Oct 28 18:39:16 2020

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