Atomistry » Mercury » PDB 1czs-1g4o » 1fl9
Atomistry »
  Mercury »
    PDB 1czs-1g4o »
      1fl9 »

Mercury in PDB 1fl9: The Yjee Protein

Protein crystallography data

The structure of The Yjee Protein, PDB code: 1fl9 was solved by A.Teplyakov, G.L.Gilliland, Structure 2 Function Project (S2F), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 2.50
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 76.400, 73.000, 96.800, 90.00, 110.20, 90.00
R / Rfree (%) 22 / 28.5

Mercury Binding Sites:

The binding sites of Mercury atom in the The Yjee Protein (pdb code 1fl9). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 3 binding sites of Mercury where determined in the The Yjee Protein, PDB code: 1fl9:
Jump to Mercury binding site number: 1; 2; 3;

Mercury binding site 1 out of 3 in 1fl9

Go back to Mercury Binding Sites List in 1fl9
Mercury binding site 1 out of 3 in the The Yjee Protein


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of The Yjee Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg200

b:45.4
occ:0.40
SG A:CYS110 1.9 31.1 1.0
CE1 A:PHE104 2.3 47.2 1.0
CB A:CYS110 2.3 39.9 1.0
CZ A:PHE104 2.9 47.5 1.0
CD1 A:PHE104 3.1 55.0 1.0
O A:TYR103 3.7 48.6 1.0
CA A:CYS110 3.8 40.6 1.0
CE2 A:PHE104 3.9 52.9 1.0
CG A:PHE104 4.1 59.0 1.0
CD1 A:ILE112 4.3 26.0 1.0
CD2 A:PHE104 4.4 58.1 1.0
SD A:MET35 4.4 58.4 1.0
N A:CYS110 4.5 39.2 1.0
C A:TYR103 4.6 49.8 1.0
C A:CYS110 4.8 40.2 1.0
CB A:TYR103 4.8 42.8 1.0
CE1 A:PHE84 5.0 24.8 1.0

Mercury binding site 2 out of 3 in 1fl9

Go back to Mercury Binding Sites List in 1fl9
Mercury binding site 2 out of 3 in the The Yjee Protein


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of The Yjee Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg200

b:37.1
occ:0.40
CE1 B:PHE104 1.8 26.8 1.0
SG B:CYS110 1.9 6.0 1.0
CD1 B:PHE104 2.1 36.4 1.0
CB B:CYS110 2.6 23.7 1.0
CE B:MET35 2.8 6.1 1.0
CZ B:PHE104 2.8 38.3 1.0
CZ B:PHE84 2.9 32.9 1.0
CG B:PHE104 3.2 48.6 1.0
CE2 B:PHE84 3.6 32.4 1.0
CE2 B:PHE104 3.7 48.8 1.0
CD2 B:PHE104 3.9 52.4 1.0
CE1 B:PHE84 4.0 35.9 1.0
CA B:CYS110 4.0 28.3 1.0
CA B:PHE104 4.2 52.3 1.0
CD1 B:ILE112 4.2 31.5 1.0
CB B:PHE104 4.3 52.9 1.0
O B:TYR103 4.4 56.0 1.0
SD B:MET35 4.5 11.7 1.0
N B:PHE104 4.5 53.0 1.0
C B:TYR103 4.6 53.4 1.0
CG1 B:ILE112 4.8 31.9 1.0
N B:CYS110 4.9 27.8 1.0
CD2 B:PHE84 4.9 34.8 1.0
CB B:TYR103 4.9 50.6 1.0
CG B:MET35 5.0 17.9 1.0
C B:CYS110 5.0 29.5 1.0

Mercury binding site 3 out of 3 in 1fl9

Go back to Mercury Binding Sites List in 1fl9
Mercury binding site 3 out of 3 in the The Yjee Protein


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 3 of The Yjee Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Hg200

b:50.1
occ:0.40
SG C:CYS110 1.2 8.8 1.0
CD1 C:PHE104 2.0 38.0 1.0
CE1 C:PHE104 2.1 32.8 1.0
CB C:CYS110 2.4 6.0 1.0
O C:TYR103 2.8 41.9 1.0
CG C:PHE104 3.0 50.2 1.0
CZ C:PHE104 3.0 41.1 1.0
C C:TYR103 3.5 45.1 1.0
CE C:MET35 3.7 33.6 1.0
CD2 C:PHE104 3.7 53.6 1.0
SD C:MET35 3.7 40.7 1.0
CE2 C:PHE104 3.7 48.5 1.0
CA C:CYS110 3.8 25.1 1.0
CA C:PHE104 3.8 55.5 1.0
CB C:PHE104 3.9 56.8 1.0
N C:PHE104 3.9 51.0 1.0
CD2 C:TYR82 4.2 40.3 1.0
O C:ILE34 4.4 46.6 1.0
CB C:TYR103 4.5 38.3 1.0
CA C:TYR103 4.6 43.3 1.0
N C:CYS110 4.6 25.8 1.0
CB C:TYR82 4.7 38.8 1.0
CB C:SER108 4.7 41.0 1.0
C C:CYS110 4.8 25.5 1.0
CG C:TYR82 4.8 39.3 1.0
CE1 C:PHE84 4.9 27.8 1.0
CD C:PRO123 4.9 51.2 1.0
CZ C:PHE84 4.9 26.9 1.0

Reference:

A.Teplyakov, G.Obmolova, M.Tordova, N.Thanki, N.Bonander, E.Eisenstein, A.J.Howard, G.L.Gilliland. Crystal Structure of the Yjee Protein From Haemophilus Influenzae: A Putative Atpase Involved in Cell Wall Synthesis Proteins V. 48 220 2002.
ISSN: ISSN 0887-3585
PubMed: 12112691
DOI: 10.1002/PROT.10114
Page generated: Sun Dec 13 19:02:39 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy