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Mercury in PDB 1gon: B-Glucosidase From Streptomyces Sp

Protein crystallography data

The structure of B-Glucosidase From Streptomyces Sp, PDB code: 1gon was solved by A.Guasch, J.A.Perez-Pons, M.Vallmitjana, E.Querol, M.Coll, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40 / 2.2
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 96.312, 111.171, 185.246, 90.00, 90.00, 90.00
R / Rfree (%) 19.84 / 22.64

Mercury Binding Sites:

The binding sites of Mercury atom in the B-Glucosidase From Streptomyces Sp (pdb code 1gon). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 6 binding sites of Mercury where determined in the B-Glucosidase From Streptomyces Sp, PDB code: 1gon:
Jump to Mercury binding site number: 1; 2; 3; 4; 5; 6;

Mercury binding site 1 out of 6 in 1gon

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Mercury binding site 1 out of 6 in the B-Glucosidase From Streptomyces Sp


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of B-Glucosidase From Streptomyces Sp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg1478

b:27.9
occ:0.70
SG A:CYS181 2.4 19.4 1.0
O A:HOH2032 2.5 24.6 1.0
O A:HOH2070 3.1 8.9 1.0
O A:HOH2132 3.3 14.3 1.0
CB A:CYS181 3.3 14.9 1.0
CD1 A:LEU185 3.5 12.5 1.0
CE1 A:HIS192 4.3 12.2 1.0
CH2 A:TRP134 4.3 7.7 1.0
OE1 A:GLU178 4.3 31.3 1.0
CA A:CYS181 4.3 14.9 1.0
CG A:LEU185 4.7 13.0 1.0
CZ2 A:TRP134 4.7 9.4 1.0
O A:HOH2118 4.7 4.6 1.0
CZ3 A:TRP180 4.8 17.1 1.0
CE3 A:TRP180 4.8 17.9 1.0
ND2 A:ASN235 4.9 22.2 1.0
ND1 A:HIS192 4.9 8.6 1.0
O A:HOH2069 5.0 34.0 1.0

Mercury binding site 2 out of 6 in 1gon

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Mercury binding site 2 out of 6 in the B-Glucosidase From Streptomyces Sp


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of B-Glucosidase From Streptomyces Sp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg1479

b:25.4
occ:0.70
NE2 A:HIS237 2.2 30.5 1.0
O A:HOH2132 3.0 14.3 1.0
CD2 A:HIS237 3.1 29.0 1.0
CE1 A:HIS237 3.2 30.7 1.0
CZ3 A:TRP180 3.3 17.1 1.0
CH2 A:TRP180 3.4 18.8 1.0
CZ2 A:TRP336 3.8 14.7 1.0
CH2 A:TRP336 4.0 16.5 1.0
CE3 A:TRP180 4.0 17.9 1.0
CZ2 A:TRP180 4.1 17.1 1.0
CG A:HIS237 4.2 29.6 1.0
ND1 A:HIS237 4.3 30.4 1.0
CD2 A:TRP180 4.7 17.9 1.0
CE2 A:TRP180 4.7 18.3 1.0
CE2 A:TRP336 4.9 14.8 1.0

Mercury binding site 3 out of 6 in 1gon

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Mercury binding site 3 out of 6 in the B-Glucosidase From Streptomyces Sp


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 3 of B-Glucosidase From Streptomyces Sp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg1480

b:22.0
occ:0.70
SG A:CYS230 2.3 23.5 1.0
CB A:CYS230 3.0 19.7 1.0
N A:CYS230 3.4 20.9 1.0
O A:HOH2170 3.4 17.4 1.0
O A:ALA228 3.5 26.6 1.0
OD1 A:ASP302 3.6 21.8 1.0
O A:HOH2129 3.6 25.5 1.0
CA A:CYS230 3.8 20.5 1.0
C A:GLN229 4.0 24.7 1.0
C A:ALA228 4.1 27.1 1.0
CA A:GLN229 4.3 24.3 1.0
CG A:ARG221 4.4 26.9 1.0
N A:GLN229 4.5 25.2 1.0
CD A:ARG221 4.6 31.6 1.0
CA A:ARG221 4.7 23.3 1.0
CG A:ASP302 4.7 22.1 1.0
O A:GLN229 4.8 24.5 1.0
N A:ARG221 4.8 21.7 1.0
CB A:ALA228 4.8 28.0 1.0
CD1 A:LEU224 5.0 28.4 1.0

Mercury binding site 4 out of 6 in 1gon

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Mercury binding site 4 out of 6 in the B-Glucosidase From Streptomyces Sp


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 4 of B-Glucosidase From Streptomyces Sp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg1479

b:32.8
occ:0.70
SG B:CYS181 2.4 24.0 1.0
O B:HOH2154 3.2 8.6 1.0
CB B:CYS181 3.4 13.5 1.0
CD1 B:LEU185 3.7 14.3 1.0
OE2 B:GLU178 4.0 28.3 1.0
CH2 B:TRP134 4.3 7.9 1.0
CE1 B:HIS192 4.3 13.4 1.0
O B:HOH2139 4.4 14.7 1.0
CA B:CYS181 4.4 13.7 1.0
CZ2 B:TRP134 4.7 10.2 1.0
ND2 B:ASN235 4.7 25.9 1.0
CG B:LEU185 4.8 15.7 1.0
ND1 B:HIS192 4.9 14.4 1.0
CZ3 B:TRP180 4.9 18.0 1.0
CE3 B:TRP180 4.9 17.7 1.0

Mercury binding site 5 out of 6 in 1gon

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Mercury binding site 5 out of 6 in the B-Glucosidase From Streptomyces Sp


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 5 of B-Glucosidase From Streptomyces Sp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg1480

b:26.2
occ:0.70
NE2 B:HIS237 2.4 21.3 1.0
O B:HOH2154 3.0 8.6 1.0
O B:HOH2155 3.1 22.3 1.0
CD2 B:HIS237 3.2 21.8 1.0
CZ3 B:TRP180 3.4 18.0 1.0
CE1 B:HIS237 3.4 22.7 1.0
CH2 B:TRP180 3.5 17.1 1.0
O B:HOH2065 3.7 33.0 1.0
CZ2 B:TRP336 3.8 19.8 1.0
CE3 B:TRP180 4.1 17.7 1.0
CH2 B:TRP336 4.2 18.6 1.0
CZ2 B:TRP180 4.2 16.3 1.0
CG B:HIS237 4.4 21.9 1.0
ND1 B:HIS237 4.5 21.8 1.0
CD2 B:TRP180 4.8 17.2 1.0
CE2 B:TRP180 4.8 16.5 1.0
CE2 B:TRP336 4.9 20.0 1.0

Mercury binding site 6 out of 6 in 1gon

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Mercury binding site 6 out of 6 in the B-Glucosidase From Streptomyces Sp


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 6 of B-Glucosidase From Streptomyces Sp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg1481

b:19.4
occ:0.70
SG B:CYS230 2.3 19.0 1.0
CB B:CYS230 3.1 14.7 1.0
OD1 B:ASP302 3.2 18.5 1.0
N B:CYS230 3.3 18.2 1.0
O B:ALA228 3.4 24.8 1.0
CA B:CYS230 3.8 18.1 1.0
C B:GLN229 4.0 21.9 1.0
C B:ALA228 4.0 25.7 1.0
CG B:ARG221 4.1 26.6 1.0
CA B:GLN229 4.2 22.6 1.0
CG B:ASP302 4.3 20.9 1.0
N B:GLN229 4.4 24.1 1.0
CB B:ALA228 4.6 25.9 1.0
CA B:ARG221 4.7 21.3 1.0
NH1 B:ARG221 4.7 37.4 1.0
CZ B:ARG221 4.7 32.3 1.0
OD2 B:ASP302 4.8 23.5 1.0
O B:GLN229 4.9 21.0 1.0
N B:ARG221 4.9 19.7 1.0
CA B:ALA228 4.9 26.3 1.0
NE B:ARG221 4.9 31.5 1.0
CB B:ARG221 5.0 22.2 1.0

Reference:

A.Guasch, M.Vallmitjana, R.Perez, E.Querol, J.A.Perez-Pons, M.Coll. Crystal Structure of A Family 1 Beta-Glucosidase From Streptomyces To Be Published.
Page generated: Sun Dec 13 19:02:58 2020

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