Mercury in PDB 1hkq: PPS10 Plasmid Dna Replication Initiator Protein Repa. Replication Inactive, Dimeric N-Terminal Domain.

The structure of PPS10 Plasmid Dna Replication Initiator Protein Repa. Replication Inactive, Dimeric N-Terminal Domain., PDB code: 1hkq was solved by R.Giraldo, C.Fernandez-Tornero, P.R.Evans, R.Diaz-Orejas, A.Romero, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	27.89 / 2.75
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	51.866, 55.533, 96.073, 90.00, 90.00, 90.00
R / Rfree (%)	23.8 / 27.2

The binding sites of Mercury atom in the PPS10 Plasmid Dna Replication Initiator Protein Repa. Replication Inactive, Dimeric N-Terminal Domain. (pdb code 1hkq). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 8 binding sites of Mercury where determined in the PPS10 Plasmid Dna Replication Initiator Protein Repa. Replication Inactive, Dimeric N-Terminal Domain., PDB code: 1hkq:
Jump to Mercury binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Mercury binding site 1 out of 8 in the PPS10 Plasmid Dna Replication Initiator Protein Repa. Replication Inactive, Dimeric N-Terminal Domain.


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of PPS10 Plasmid Dna Replication Initiator Protein Repa. Replication Inactive, Dimeric N-Terminal Domain. within 5.0Å range: probe atom residue distance (Å) B Occ A:Hg1133 b:50.5 occ:1.00 C4 A:BEZ1134 2.0 72.0 1.0 SG A:CYS106 2.4 46.3 1.0 C5 A:BEZ1134 2.8 71.2 1.0 C3 A:BEZ1134 3.0 70.3 1.0 CB A:CYS106 3.1 42.3 1.0 OE1 A:GLN104 3.2 56.4 1.0 CB A:GLN104 3.4 48.1 1.0 O A:GLN104 3.8 47.4 1.0 CG2 A:THR47 4.0 36.5 1.0 CD A:GLN104 4.0 54.5 1.0 CG A:GLN104 4.1 51.3 1.0 C6 A:BEZ1134 4.1 71.1 1.0 C2 A:BEZ1134 4.3 70.4 1.0 C A:GLN104 4.4 47.2 1.0 CA A:CYS106 4.4 42.9 1.0 CA A:GLN104 4.5 47.3 1.0 N A:CYS106 4.6 43.5 1.0 C1 A:BEZ1134 4.7 70.7 1.0

Mercury binding site 2 out of 8 in the PPS10 Plasmid Dna Replication Initiator Protein Repa. Replication Inactive, Dimeric N-Terminal Domain.


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of PPS10 Plasmid Dna Replication Initiator Protein Repa. Replication Inactive, Dimeric N-Terminal Domain. within 5.0Å range: probe atom residue distance (Å) B Occ A:Hg1135 b:31.5 occ:0.38 SG A:CYS29 2.4 36.2 1.0 CB A:CYS29 3.3 33.9 1.0 CA A:CYS29 3.6 32.4 1.0 O A:CYS29 3.6 30.4 1.0 OG A:SER32 3.6 46.2 1.0 C A:CYS29 3.9 31.9 1.0 CG2 A:VAL56 4.3 29.6 1.0 CG A:LEU33 4.8 43.5 1.0 CB A:SER32 4.9 41.7 1.0 N A:CYS29 4.9 31.9 1.0 CB A:VAL56 5.0 30.3 1.0 CD2 A:LEU33 5.0 42.5 1.0

Mercury binding site 3 out of 8 in the PPS10 Plasmid Dna Replication Initiator Protein Repa. Replication Inactive, Dimeric N-Terminal Domain.


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 3 of PPS10 Plasmid Dna Replication Initiator Protein Repa. Replication Inactive, Dimeric N-Terminal Domain. within 5.0Å range: probe atom residue distance (Å) B Occ A:Hg1136 b:36.2 occ:0.51 NE2 A:HIS118 2.6 37.2 1.0 CE1 A:HIS118 2.7 35.9 1.0 O A:THR114 3.2 24.5 1.0 O A:HOH2020 3.4 35.1 1.0 CD2 A:HIS118 3.6 36.5 1.0 ND1 A:HIS118 3.8 33.3 1.0 C A:THR114 4.0 25.1 1.0 CA A:THR114 4.2 24.9 1.0 CG A:HIS118 4.3 32.5 1.0 CB A:THR114 4.4 25.3 1.0

Mercury binding site 4 out of 8 in the PPS10 Plasmid Dna Replication Initiator Protein Repa. Replication Inactive, Dimeric N-Terminal Domain.


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 4 of PPS10 Plasmid Dna Replication Initiator Protein Repa. Replication Inactive, Dimeric N-Terminal Domain. within 5.0Å range: probe atom residue distance (Å) B Occ A:Hg1137 b:65.1 occ:0.42 NE2 A:HIS123 2.2 32.4 1.0 CE1 A:HIS123 3.0 32.1 1.0 CD2 A:HIS123 3.2 32.1 1.0 CB A:SER32 3.7 41.7 1.0 ND1 A:HIS123 4.1 33.3 1.0 CG A:HIS123 4.3 32.8 1.0 CA A:SER32 4.5 40.8 1.0 OG A:SER32 4.8 46.2 1.0 OG1 A:THR127 5.0 42.6 1.0

Mercury binding site 5 out of 8 in the PPS10 Plasmid Dna Replication Initiator Protein Repa. Replication Inactive, Dimeric N-Terminal Domain.


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 5 of PPS10 Plasmid Dna Replication Initiator Protein Repa. Replication Inactive, Dimeric N-Terminal Domain. within 5.0Å range: probe atom residue distance (Å) B Occ B:Hg1133 b:47.8 occ:1.00 C4 B:BEZ1134 2.1 63.2 1.0 SG B:CYS106 2.5 38.0 1.0 C3 B:BEZ1134 2.9 62.0 1.0 OE1 B:GLN104 3.0 39.2 1.0 C5 B:BEZ1134 3.1 63.3 1.0 O B:GLN104 3.4 37.7 1.0 CB B:CYS106 3.5 38.2 1.0 CB B:GLN104 3.7 35.5 1.0 CD B:GLN104 3.9 37.5 1.0 CG B:GLN104 4.0 35.6 1.0 C2 B:BEZ1134 4.2 61.6 1.0 C B:GLN104 4.3 37.4 1.0 C6 B:BEZ1134 4.4 62.8 1.0 CA B:GLN104 4.7 37.3 1.0 CG2 B:THR47 4.7 45.9 1.0 CA B:CYS106 4.8 38.0 1.0 O B:GLY105 4.8 39.9 1.0 C1 B:BEZ1134 4.9 61.4 1.0 N B:CYS106 4.9 38.9 1.0 C B:GLY105 4.9 39.5 1.0

Mercury binding site 6 out of 8 in the PPS10 Plasmid Dna Replication Initiator Protein Repa. Replication Inactive, Dimeric N-Terminal Domain.


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 6 of PPS10 Plasmid Dna Replication Initiator Protein Repa. Replication Inactive, Dimeric N-Terminal Domain. within 5.0Å range: probe atom residue distance (Å) B Occ B:Hg1135 b:31.7 occ:0.10 SG B:CYS29 2.5 71.3 1.0 OG B:SER32 3.2 80.6 1.0 O B:CYS29 3.3 72.7 1.0 CA B:CYS29 3.4 69.9 1.0 CB B:CYS29 3.5 69.9 1.0 C B:CYS29 3.7 71.7 1.0 CB B:SER32 4.1 82.3 1.0 CG2 B:VAL56 4.5 66.2 1.0 N B:CYS29 4.7 67.9 1.0 N B:ALA30 4.9 73.5 1.0 CG1 B:VAL56 5.0 66.2 1.0

Mercury binding site 7 out of 8 in the PPS10 Plasmid Dna Replication Initiator Protein Repa. Replication Inactive, Dimeric N-Terminal Domain.


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 7 of PPS10 Plasmid Dna Replication Initiator Protein Repa. Replication Inactive, Dimeric N-Terminal Domain. within 5.0Å range: probe atom residue distance (Å) B Occ B:Hg1136 b:50.9 occ:0.20 NE2 B:HIS118 2.1 55.6 1.0 CD2 B:HIS118 3.0 55.3 1.0 O B:THR114 3.1 40.9 1.0 CE1 B:HIS118 3.2 56.3 1.0 CG2 B:THR114 3.6 41.3 1.0 C B:THR114 4.1 40.5 1.0 CG B:HIS118 4.2 56.0 1.0 ND1 B:HIS118 4.2 56.2 1.0 CA B:THR114 4.4 38.8 1.0 CB B:THR114 4.6 38.1 1.0 OG B:SER9 4.7 87.1 1.0 CB B:PRO117 4.9 56.9 1.0

Mercury binding site 8 out of 8 in the PPS10 Plasmid Dna Replication Initiator Protein Repa. Replication Inactive, Dimeric N-Terminal Domain.


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 8 of PPS10 Plasmid Dna Replication Initiator Protein Repa. Replication Inactive, Dimeric N-Terminal Domain. within 5.0Å range: probe atom residue distance (Å) B Occ B:Hg1137 b:70.9 occ:0.20 NE2 B:HIS123 2.1 76.1 1.0 CD2 B:HIS123 2.4 75.5 1.0 CE1 B:HIS123 3.3 76.4 1.0 CG B:HIS123 3.7 75.0 1.0 ND1 B:HIS123 4.0 75.8 1.0 CB B:SER32 4.2 82.3 1.0 CA B:SER32 4.3 83.0 1.0 CD1 B:LEU28 4.4 65.3 1.0 O B:LEU28 4.6 66.2 1.0 N B:SER32 4.7 81.6 1.0 CG B:LEU28 4.8 66.2 1.0 CB B:HIS123 4.9 74.7 1.0

R.Giraldo, C.Fernandez-Tornero, P.R.Evans, R.Diaz-Orejas, A.Romero. A Conformational Switch Between Transcriptional Repression and Replication Initiation in Repa Dimerization Domain Nat.Struct.Biol. V. 10 496 2003.
ISSN: ISSN 1072-8368
PubMed: 12825085
DOI: 10.1038/NSB0703-496