Atomistry » Mercury » PDB 1g52-1irk » 1in0
Atomistry »
  Mercury »
    PDB 1g52-1irk »
      1in0 »

Mercury in PDB 1in0: Yajq Protein (HI1034)

Protein crystallography data

The structure of Yajq Protein (HI1034), PDB code: 1in0 was solved by A.Teplyakov, G.L.Gilliland, Structure 2 Function Project (S2F), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 2.14
Space group P 43 2 2
Cell size a, b, c (Å), α, β, γ (°) 62.800, 62.800, 194.500, 90.00, 90.00, 90.00
R / Rfree (%) 19.3 / n/a

Other elements in 1in0:

The structure of Yajq Protein (HI1034) also contains other interesting chemical elements:

Sodium (Na) 2 atoms

Mercury Binding Sites:

The binding sites of Mercury atom in the Yajq Protein (HI1034) (pdb code 1in0). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 4 binding sites of Mercury where determined in the Yajq Protein (HI1034), PDB code: 1in0:
Jump to Mercury binding site number: 1; 2; 3; 4;

Mercury binding site 1 out of 4 in 1in0

Go back to Mercury Binding Sites List in 1in0
Mercury binding site 1 out of 4 in the Yajq Protein (HI1034)


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Yajq Protein (HI1034) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg202

b:61.3
occ:0.40
SG A:CYS69 2.4 32.9 1.0
C A:MMC201 2.9 24.2 0.6
HG A:MMC201 3.0 37.0 0.6
CG2 A:ILE74 3.2 33.7 1.0
CD2 A:LEU79 3.3 29.7 1.0
CD1 A:ILE74 3.7 24.6 1.0
CB A:ILE74 3.8 36.6 1.0
CG A:LEU79 3.8 33.1 1.0
CB A:CYS69 3.9 23.1 1.0
CD1 A:LEU79 4.1 42.5 1.0
CG1 A:ILE74 4.4 37.7 1.0
CA A:CYS69 4.5 44.6 1.0
O A:GLU75 4.6 52.5 1.0
CA A:HIS76 5.0 49.4 1.0

Mercury binding site 2 out of 4 in 1in0

Go back to Mercury Binding Sites List in 1in0
Mercury binding site 2 out of 4 in the Yajq Protein (HI1034)


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of Yajq Protein (HI1034) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg201

b:37.0
occ:0.60
HG A:MMC201 0.0 37.0 0.6
C A:MMC201 1.4 24.2 0.6
SG A:CYS69 2.5 32.9 1.0
HG A:HG202 3.0 61.3 0.4
O A:LEU65 3.0 39.1 1.0
N A:CYS69 3.3 42.2 1.0
CB A:CYS69 3.5 23.1 1.0
CA A:CYS69 3.6 44.6 1.0
C A:LEU65 3.6 30.6 1.0
CB A:ALA18 3.8 39.7 1.0
C A:SER68 4.1 41.9 1.0
CD1 A:LEU79 4.2 42.5 1.0
CA A:LEU65 4.3 42.9 1.0
CB A:SER68 4.5 39.1 1.0
CG A:LEU65 4.5 55.0 1.0
N A:ILE66 4.5 34.5 1.0
CB A:LEU65 4.6 44.6 1.0
CA A:SER68 4.7 33.0 1.0
CA A:ILE66 4.8 42.4 1.0
O A:SER68 4.9 35.8 1.0
CD1 A:ILE74 4.9 24.6 1.0
CD2 A:LEU79 5.0 29.7 1.0
CG A:LEU79 5.0 33.1 1.0

Mercury binding site 3 out of 4 in 1in0

Go back to Mercury Binding Sites List in 1in0
Mercury binding site 3 out of 4 in the Yajq Protein (HI1034)


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 3 of Yajq Protein (HI1034) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg201

b:49.9
occ:0.60
SG B:CYS69 2.7 48.8 1.0
CD1 B:LEU65 2.8 69.7 1.0
O B:LEU65 3.1 34.0 1.0
CB B:ALA18 3.6 29.2 1.0
CB B:CYS69 3.8 44.3 1.0
N B:CYS69 3.8 59.5 1.0
C B:LEU65 3.9 41.4 1.0
HG B:HG202 3.9 67.1 0.4
CG B:LEU65 3.9 72.9 1.0
CA B:CYS69 4.1 61.4 1.0
CB B:LEU65 4.1 33.1 1.0
CD1 B:ILE48 4.1 34.3 1.0
CA B:LEU65 4.2 39.6 1.0
O B:ALA18 4.3 47.4 1.0
C B:ALA18 4.3 49.7 1.0
CB B:SER68 4.4 56.3 1.0
CA B:ALA18 4.6 56.3 1.0
N B:VAL19 4.7 45.7 1.0
CD2 B:LEU65 4.7 29.4 1.0
C B:SER68 4.7 58.9 1.0
CG2 B:VAL19 4.8 66.2 1.0
N B:ILE66 5.0 34.5 1.0

Mercury binding site 4 out of 4 in 1in0

Go back to Mercury Binding Sites List in 1in0
Mercury binding site 4 out of 4 in the Yajq Protein (HI1034)


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 4 of Yajq Protein (HI1034) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg202

b:67.1
occ:0.40
SG B:CYS69 2.0 48.8 1.0
CG2 B:ILE74 2.7 60.2 1.0
CB B:ILE74 3.1 66.4 1.0
CB B:CYS69 3.4 44.3 1.0
CD1 B:ILE74 3.6 67.2 1.0
CD2 B:LEU79 3.6 31.7 1.0
CD1 B:LEU79 3.8 46.4 1.0
O B:ILE74 3.8 73.2 1.0
CG B:LEU79 3.8 44.7 1.0
HG B:HG201 3.9 49.9 0.6
CG1 B:ILE74 3.9 52.5 1.0
CA B:CYS69 4.3 61.4 1.0
C B:ILE74 4.4 66.2 1.0
CA B:ILE74 4.4 67.0 1.0
CD1 B:LEU65 4.8 69.7 1.0
CD2 B:LEU98 4.8 30.4 1.0
O B:GLU75 4.8 59.9 1.0

Reference:

A.Teplyakov, G.Obmolova, N.Bir, P.Reddy, A.J.Howard, G.L.Gilliland. Crystal Structure of the Yajq Protein From Haemophilus Influenzae Reveals A Tandem of Rnp-Like Domains J.Struct.Funct.Genom. V. 4 1 2003.
ISSN: ISSN 1345-711X
PubMed: 12943362
DOI: 10.1023/A:1024620416876
Page generated: Sun Aug 11 00:04:29 2024

Last articles

Mg in 4Y52
Mg in 4Y30
Mg in 4Y2V
Mg in 4Y2X
Mg in 4Y2Y
Mg in 4Y2U
Mg in 4Y2T
Mg in 4Y2Q
Mg in 4Y2R
Mg in 4Y2S
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy