Atomistry » Mercury » PDB 1is9-1obh » 1kgz
Atomistry »
  Mercury »
    PDB 1is9-1obh »
      1kgz »

Mercury in PDB 1kgz: Crystal Structure Analysis of the Anthranilate Phosphoribosyltransferase From Erwinia Carotovora (Current Name, Pectobacterium Carotovorum)

Enzymatic activity of Crystal Structure Analysis of the Anthranilate Phosphoribosyltransferase From Erwinia Carotovora (Current Name, Pectobacterium Carotovorum)

All present enzymatic activity of Crystal Structure Analysis of the Anthranilate Phosphoribosyltransferase From Erwinia Carotovora (Current Name, Pectobacterium Carotovorum):
2.4.2.18;

Protein crystallography data

The structure of Crystal Structure Analysis of the Anthranilate Phosphoribosyltransferase From Erwinia Carotovora (Current Name, Pectobacterium Carotovorum), PDB code: 1kgz was solved by C.Kim, N.-H.Xuong, S.Edwards, Madhusudan, M.-C.Yee, G.Spraggon, S.E.Mills, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.00 / 2.40
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 77.378, 81.686, 101.680, 90.00, 90.00, 90.00
R / Rfree (%) 21.4 / 26.5

Other elements in 1kgz:

The structure of Crystal Structure Analysis of the Anthranilate Phosphoribosyltransferase From Erwinia Carotovora (Current Name, Pectobacterium Carotovorum) also contains other interesting chemical elements:

Manganese (Mn) 4 atoms

Mercury Binding Sites:

The binding sites of Mercury atom in the Crystal Structure Analysis of the Anthranilate Phosphoribosyltransferase From Erwinia Carotovora (Current Name, Pectobacterium Carotovorum) (pdb code 1kgz). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 2 binding sites of Mercury where determined in the Crystal Structure Analysis of the Anthranilate Phosphoribosyltransferase From Erwinia Carotovora (Current Name, Pectobacterium Carotovorum), PDB code: 1kgz:
Jump to Mercury binding site number: 1; 2;

Mercury binding site 1 out of 2 in 1kgz

Go back to Mercury Binding Sites List in 1kgz
Mercury binding site 1 out of 2 in the Crystal Structure Analysis of the Anthranilate Phosphoribosyltransferase From Erwinia Carotovora (Current Name, Pectobacterium Carotovorum)


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Crystal Structure Analysis of the Anthranilate Phosphoribosyltransferase From Erwinia Carotovora (Current Name, Pectobacterium Carotovorum) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg400

b:57.5
occ:1.00
O A:CYS113 2.4 30.8 1.0
SG A:CYS113 2.6 46.4 1.0
CB A:CYS113 3.2 39.5 1.0
C A:CYS113 3.3 40.0 1.0
CD1 A:LEU310 3.4 32.7 1.0
CA A:CYS113 3.6 38.8 1.0
CD1 A:LEU324 4.1 27.1 1.0
CD2 A:LEU310 4.1 33.9 1.0
CB A:LEU324 4.2 30.1 1.0
CG A:LEU310 4.4 39.9 1.0
N A:GLY114 4.5 41.4 1.0
CG A:LEU324 4.8 34.5 1.0
N A:CYS113 5.0 41.8 1.0

Mercury binding site 2 out of 2 in 1kgz

Go back to Mercury Binding Sites List in 1kgz
Mercury binding site 2 out of 2 in the Crystal Structure Analysis of the Anthranilate Phosphoribosyltransferase From Erwinia Carotovora (Current Name, Pectobacterium Carotovorum)


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of Crystal Structure Analysis of the Anthranilate Phosphoribosyltransferase From Erwinia Carotovora (Current Name, Pectobacterium Carotovorum) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg400

b:44.7
occ:1.00
SG B:CYS113 2.4 32.9 1.0
O B:CYS113 2.7 38.0 1.0
C B:CYS113 3.2 34.8 1.0
CB B:CYS113 3.4 34.0 1.0
CD2 B:LEU310 3.5 27.4 1.0
CA B:CYS113 3.9 32.4 1.0
N B:GLY114 3.9 35.2 1.0
N B:ALA115 3.9 36.6 1.0
CD1 B:LEU310 3.9 29.5 1.0
O B:ALA110 4.1 41.0 1.0
CA B:GLY114 4.2 35.2 1.0
CD2 B:LEU324 4.3 27.2 1.0
C B:GLY114 4.3 36.4 1.0
CG B:LEU310 4.3 28.0 1.0
CB B:ALA115 4.4 30.8 1.0
CA B:ALA115 4.7 35.9 1.0
N B:CYS113 4.7 36.7 1.0

Reference:

C.Kim, N.-H.Xuong, S.Edwards, Madhusudan, M.-C.Yee, G.Spraggon, S.E.Mills. The Crystal Structure of Anthranilate Phosphoribosyltransferase From the Enterobacterium Pectobacterium Carotovorum Febs Lett. V. 523 239 2002.
ISSN: ISSN 0014-5793
PubMed: 12123839
DOI: 10.1016/S0014-5793(02)02905-8
Page generated: Sun Dec 13 19:03:40 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy