Mercury in PDB 1lz7: Glycosyltransferase B

The structure of Glycosyltransferase B, PDB code: 1lz7 was solved by S.I.Patenaude, N.O.L.Seto, S.N.Borisova, A.Szpacenko, S.L.Marcus, M.M.Palcic, S.V.Evans, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.65
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	52.800, 149.960, 80.040, 90.00, 90.00, 90.00
R / Rfree (%)	18.1 / 20.5

The binding sites of Mercury atom in the Glycosyltransferase B (pdb code 1lz7). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 3 binding sites of Mercury where determined in the Glycosyltransferase B, PDB code: 1lz7:
Jump to Mercury binding site number: 1; 2; 3;

Mercury binding site 1 out of 3 in the Glycosyltransferase B


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Glycosyltransferase B within 5.0Å range: probe atom residue distance (Å) B Occ A:Hg401 b:41.4 occ:0.50 SG A:CYS284 2.6 23.5 0.5 OD1 A:ASP302 2.9 35.9 1.0 SD A:MET288 3.1 36.7 1.0 CB A:CYS284 3.7 25.2 0.5 N A:HIS285 3.8 26.3 1.0 C A:CYS284 3.8 26.5 0.5 C A:CYS284 3.8 26.1 0.5 O A:CYS284 3.9 26.7 0.5 CB A:CYS284 3.9 26.5 0.5 CG A:ASP302 4.0 33.4 1.0 CA A:HIS285 4.0 29.6 1.0 CG A:MET288 4.0 30.4 1.0 O A:CYS284 4.0 25.8 0.5 CA A:CYS284 4.4 25.1 0.5 CA A:CYS284 4.5 25.7 0.5 CB A:MET288 4.6 27.6 1.0 CB A:ASP302 4.6 29.2 1.0 CB A:HIS285 4.7 31.5 1.0 CE A:MET288 4.7 35.6 1.0 OD2 A:ASP302 4.8 37.1 1.0 O A:THR281 4.9 23.5 1.0 HG A:HG402 4.9 36.2 0.5 CA A:ASP302 5.0 25.2 1.0

Mercury binding site 2 out of 3 in the Glycosyltransferase B


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of Glycosyltransferase B within 5.0Å range: probe atom residue distance (Å) B Occ A:Hg402 b:36.2 occ:0.50 SG A:CYS284 2.6 25.1 0.5 SG A:CYS284 2.9 23.5 0.5 CB A:CYS284 3.0 25.2 0.5 CB A:CYS284 3.0 26.5 0.5 CD2 A:LEU280 3.2 20.4 1.0 CA A:LEU306 4.0 14.9 1.0 CB A:LEU306 4.0 15.9 1.0 N A:LEU306 4.1 16.7 1.0 O A:ASP302 4.1 21.6 1.0 O A:LEU280 4.3 18.6 1.0 CG A:LEU280 4.3 18.2 1.0 O A:HOH751 4.4 34.8 1.0 CA A:CYS284 4.4 25.1 0.5 CD1 A:LEU306 4.5 18.8 1.0 CA A:CYS284 4.5 25.7 0.5 C A:HIS305 4.7 17.9 1.0 C A:LEU280 4.8 17.8 1.0 CA A:THR281 4.9 21.7 1.0 CG A:LEU306 4.9 17.7 1.0 HG A:HG401 4.9 41.4 0.5 CB A:HIS305 5.0 21.4 1.0 N A:CYS284 5.0 25.2 0.5

Mercury binding site 3 out of 3 in the Glycosyltransferase B


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 3 of Glycosyltransferase B within 5.0Å range: probe atom residue distance (Å) B Occ A:Hg403 b:37.7 occ:1.00 SG A:CYS209 2.3 21.9 1.0 OG1 A:THR119 3.0 22.8 1.0 CB A:CYS209 3.3 17.9 1.0 O A:HOH528 3.9 15.3 1.0 CB A:THR119 4.0 18.4 1.0 CG2 A:THR119 4.2 20.1 1.0 CA A:CYS209 4.2 14.8 1.0 CG1 A:VAL277 4.2 12.5 1.0 CD1 A:LEU207 4.7 22.6 1.0 N A:CYS209 4.7 15.5 1.0 CZ A:PHE270 4.9 18.9 1.0 CE1 A:PHE270 4.9 17.1 1.0

S.I.Patenaude, N.O.Seto, S.N.Borisova, A.Szpacenko, S.L.Marcus, M.M.Palcic, S.V.Evans. The Structural Basis For Specificity in Human Abo(H) Blood Group Biosynthesis. Nat.Struct.Biol. V. 9 685 2002.
ISSN: ISSN 1072-8368
PubMed: 12198488
DOI: 10.1038/NSB832