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Mercury in PDB 1lzi: Glycosyltransferase A + Udp + H Antigen Acceptor

Enzymatic activity of Glycosyltransferase A + Udp + H Antigen Acceptor

All present enzymatic activity of Glycosyltransferase A + Udp + H Antigen Acceptor:
2.4.1.40;

Protein crystallography data

The structure of Glycosyltransferase A + Udp + H Antigen Acceptor, PDB code: 1lzi was solved by S.I.Patenaude, N.O.L.Seto, S.N.Borisova, A.Szpacenko, S.L.Marcus, M.M.Palcic, S.V.Evans, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.35
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 52.810, 149.580, 79.970, 90.00, 90.00, 90.00
R / Rfree (%) 17.9 / 20

Other elements in 1lzi:

The structure of Glycosyltransferase A + Udp + H Antigen Acceptor also contains other interesting chemical elements:

Manganese (Mn) 1 atom

Mercury Binding Sites:

The binding sites of Mercury atom in the Glycosyltransferase A + Udp + H Antigen Acceptor (pdb code 1lzi). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 5 binding sites of Mercury where determined in the Glycosyltransferase A + Udp + H Antigen Acceptor, PDB code: 1lzi:
Jump to Mercury binding site number: 1; 2; 3; 4; 5;

Mercury binding site 1 out of 5 in 1lzi

Go back to Mercury Binding Sites List in 1lzi
Mercury binding site 1 out of 5 in the Glycosyltransferase A + Udp + H Antigen Acceptor


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Glycosyltransferase A + Udp + H Antigen Acceptor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg401

b:18.0
occ:1.00
 O A:HOH766 2.1 22.6 1.0
SG A:CYS80 2.3 15.5 1.0
O A:GLY98 3.0 14.0 1.0
CB A:CYS80 3.2 15.8 1.0
O A:HOH825 3.3 25.9 1.0
O A:HOH557 3.5 17.7 1.0
O A:HOH562 3.6 22.8 1.0
O A:HOH613 3.6 17.3 1.0
CA A:CYS80 3.6 15.5 1.0
O A:HOH526 3.9 14.2 1.0
O A:HOH625 4.0 23.3 1.0
C A:GLY98 4.1 12.7 1.0
O A:HOH821 4.2 37.7 1.0
CA A:THR99 4.2 11.7 1.0
N A:CYS80 4.4 14.6 1.0
O A:THR99 4.4 13.6 1.0
C A:THR99 4.6 11.6 1.0
N A:THR99 4.6 11.9 1.0
C A:CYS80 4.8 12.9 1.0
O A:CYS80 5.0 15.0 1.0

Mercury binding site 2 out of 5 in 1lzi

Go back to Mercury Binding Sites List in 1lzi
Mercury binding site 2 out of 5 in the Glycosyltransferase A + Udp + H Antigen Acceptor


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of Glycosyltransferase A + Udp + H Antigen Acceptor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg402

b:28.5
occ:1.00
 SG A:CYS209 2.2 19.8 1.0
O A:HOH767 2.4 40.1 1.0
OG1 A:THR119 3.0 18.2 1.0
CB A:CYS209 3.3 10.4 1.0
O A:HOH765 3.4 23.7 1.0
CG2 A:THR119 3.9 14.3 1.0
CB A:THR119 3.9 13.8 1.0
CG1 A:VAL277 4.2 14.3 1.0
CA A:CYS209 4.2 11.5 1.0
O A:HOH866 4.3 40.4 1.0
CD1 A:LEU207 4.7 16.6 1.0
N A:CYS209 4.7 11.3 1.0
CZ A:PHE270 4.8 15.9 1.0
CB A:LEU207 4.9 13.9 1.0
CE1 A:PHE270 4.9 15.2 1.0

Mercury binding site 3 out of 5 in 1lzi

Go back to Mercury Binding Sites List in 1lzi
Mercury binding site 3 out of 5 in the Glycosyltransferase A + Udp + H Antigen Acceptor


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 3 of Glycosyltransferase A + Udp + H Antigen Acceptor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg403

b:24.0
occ:0.70
 O A:HOH765 2.3 23.7 1.0
O A:HOH563 2.4 21.2 1.0
O A:HOH538 3.1 48.4 1.0
N A:VAL210 3.4 9.4 1.0
O A:VAL210 3.5 12.2 1.0
C A:CYS209 3.5 10.4 1.0
CB A:CYS209 3.7 10.4 1.0
C A:VAL210 3.8 11.3 1.0
CA A:VAL210 3.9 10.2 1.0
O A:CYS209 3.9 10.0 1.0
CA A:CYS209 4.0 11.5 1.0
O A:HOH520 4.1 18.6 1.0
CE2 A:PHE270 4.3 16.1 1.0
N A:ASP211 4.5 12.8 1.0
O A:THR119 4.7 13.4 1.0
CD1 A:PHE121 4.7 21.3 1.0
O A:GLY267 4.8 13.9 1.0
CZ A:PHE270 4.8 15.9 1.0
CE1 A:PHE121 4.9 22.1 1.0
OG1 A:THR119 5.0 18.2 1.0

Mercury binding site 4 out of 5 in 1lzi

Go back to Mercury Binding Sites List in 1lzi
Mercury binding site 4 out of 5 in the Glycosyltransferase A + Udp + H Antigen Acceptor


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 4 of Glycosyltransferase A + Udp + H Antigen Acceptor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg404

b:28.7
occ:0.70
 SG A:CYS284 2.3 16.9 0.5
CD2 A:LEU280 2.9 17.2 0.5
CB A:CYS284 3.1 18.6 0.5
CB A:CYS284 3.1 17.6 0.5
SG A:CYS284 3.2 19.8 0.5
CD1 A:LEU280 3.7 14.6 0.5
O A:HOH854 3.8 43.5 1.0
CG A:LEU280 3.9 15.0 0.5
CB A:LEU306 4.0 12.5 0.5
O A:LEU280 4.1 14.3 0.5
CA A:LEU306 4.1 11.2 0.5
CG A:LEU280 4.1 13.6 0.5
CA A:LEU306 4.1 10.5 0.5
CB A:LEU306 4.1 11.9 0.5
O A:LEU280 4.1 14.3 0.5
N A:LEU306 4.3 10.5 0.5
N A:LEU306 4.3 11.2 0.5
O A:HOH770 4.3 30.9 1.0
O A:ASP302 4.4 14.5 1.0
CA A:CYS284 4.4 18.2 0.5
CD1 A:LEU306 4.4 14.5 0.5
CA A:CYS284 4.5 17.1 0.5
CD2 A:LEU280 4.5 14.6 0.5
CD1 A:LEU306 4.6 14.5 0.5
C A:LEU280 4.6 13.4 0.5
C A:LEU280 4.6 14.0 0.5
CG A:LEU306 4.6 12.8 0.5
CA A:THR281 4.7 15.8 1.0
C A:HIS305 4.9 11.1 1.0
CG A:LEU306 4.9 12.3 0.5
N A:THR281 4.9 13.8 1.0
N A:CYS284 4.9 17.4 0.5
N A:CYS284 4.9 16.8 0.5
CD1 A:LEU280 5.0 15.4 0.5

Mercury binding site 5 out of 5 in 1lzi

Go back to Mercury Binding Sites List in 1lzi
Mercury binding site 5 out of 5 in the Glycosyltransferase A + Udp + H Antigen Acceptor


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 5 of Glycosyltransferase A + Udp + H Antigen Acceptor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg405

b:33.2
occ:0.50
 SG A:CYS284 2.5 19.8 0.5
OD2 A:ASP302 2.9 26.1 1.0
CD2 A:HIS285 3.1 27.7 0.5
SD A:MET288 3.2 27.4 1.0
CB A:CYS284 3.5 18.6 0.5
CB A:CYS284 3.7 17.6 0.5
N A:HIS285 3.7 19.0 0.5
C A:CYS284 3.7 17.2 0.5
NE2 A:HIS285 3.8 28.9 0.5
C A:CYS284 3.8 18.2 0.5
N A:HIS285 3.8 18.3 0.5
O A:CYS284 3.8 17.5 0.5
CG A:ASP302 3.8 22.3 1.0
CA A:HIS285 4.0 19.7 0.5
CA A:HIS285 4.0 20.2 0.5
CG A:MET288 4.1 22.7 1.0
O A:CYS284 4.1 18.5 0.5
CG A:HIS285 4.1 25.9 0.5
O A:HOH854 4.2 43.5 1.0
CA A:CYS284 4.3 18.2 0.5
CA A:CYS284 4.4 17.1 0.5
CB A:ASP302 4.5 19.4 1.0
CB A:HIS285 4.7 22.0 0.5
OD1 A:ASP302 4.7 25.9 1.0
CB A:MET288 4.7 19.8 1.0
CB A:HIS285 4.8 22.4 0.5
O A:THR281 4.8 15.6 1.0
CE A:MET288 4.8 28.8 1.0
CE1 A:HIS285 5.0 28.7 0.5

Reference:

S.I.Patenaude, N.O.Seto, S.N.Borisova, A.Szpacenko, S.L.Marcus, M.M.Palcic, S.V.Evans. The Structural Basis For Specificity in Human Abo(H) Blood Group Biosynthesis. Nat.Struct.Biol. V. 9 685 2002.
ISSN: ISSN 1072-8368
PubMed: 12198488
DOI: 10.1038/NSB832
Page generated: Sun Aug 11 00:29:51 2024

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