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Mercury in PDB 1lzj: Glycosyltransferase B + Udp + H Antigen Acceptor

Protein crystallography data

The structure of Glycosyltransferase B + Udp + H Antigen Acceptor, PDB code: 1lzj was solved by S.I.Patenaude, N.O.L.Seto, S.N.Borisova, A.Szpacenko, S.L.Marcus, M.M.Palcic, S.V.Evans, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.32
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 52.740, 149.480, 79.530, 90.00, 90.00, 90.00
R / Rfree (%) 18.4 / 20

Other elements in 1lzj:

The structure of Glycosyltransferase B + Udp + H Antigen Acceptor also contains other interesting chemical elements:

Manganese (Mn) 1 atom

Mercury Binding Sites:

The binding sites of Mercury atom in the Glycosyltransferase B + Udp + H Antigen Acceptor (pdb code 1lzj). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 4 binding sites of Mercury where determined in the Glycosyltransferase B + Udp + H Antigen Acceptor, PDB code: 1lzj:
Jump to Mercury binding site number: 1; 2; 3; 4;

Mercury binding site 1 out of 4 in 1lzj

Go back to Mercury Binding Sites List in 1lzj
Mercury binding site 1 out of 4 in the Glycosyltransferase B + Udp + H Antigen Acceptor


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Glycosyltransferase B + Udp + H Antigen Acceptor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg401

b:30.2
occ:1.00
SG A:CYS209 2.2 18.2 1.0
O A:HOH719 2.2 26.3 1.0
OG1 A:THR119 3.0 18.6 1.0
CB A:CYS209 3.3 10.9 1.0
O A:HOH780 3.6 43.5 1.0
CB A:THR119 3.9 15.6 1.0
CG2 A:THR119 3.9 17.3 1.0
CA A:CYS209 4.2 12.9 1.0
CG1 A:VAL277 4.3 14.2 1.0
O A:HOH661 4.5 24.3 1.0
CD1 A:LEU207 4.7 18.9 1.0
N A:CYS209 4.8 12.6 1.0
CE1 A:PHE270 4.8 15.6 1.0
CZ A:PHE270 4.8 17.3 1.0

Mercury binding site 2 out of 4 in 1lzj

Go back to Mercury Binding Sites List in 1lzj
Mercury binding site 2 out of 4 in the Glycosyltransferase B + Udp + H Antigen Acceptor


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of Glycosyltransferase B + Udp + H Antigen Acceptor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg402

b:33.1
occ:1.00
O A:HOH663 2.2 26.0 1.0
SG A:CYS284 2.3 16.8 0.5
CB A:CYS284 3.1 20.4 0.5
CB A:CYS284 3.1 18.4 0.5
SG A:CYS284 3.1 23.1 0.5
CD1 A:LEU280 3.7 19.4 1.0
O A:HOH669 3.8 52.6 1.0
CG A:LEU280 3.9 17.6 1.0
CA A:LEU306 4.0 12.5 1.0
CB A:LEU306 4.0 14.2 1.0
N A:LEU306 4.1 13.3 1.0
O A:LEU280 4.2 14.8 1.0
O A:ASP302 4.3 18.1 0.5
O A:ASP302 4.3 18.1 0.5
CD1 A:LEU306 4.4 15.1 1.0
CA A:CYS284 4.4 19.2 0.5
CD2 A:LEU280 4.5 20.0 1.0
CA A:CYS284 4.5 17.7 0.5
O A:HOH664 4.7 29.7 1.0
C A:LEU280 4.7 15.0 1.0
C A:HIS305 4.7 13.6 1.0
CG A:LEU306 4.8 13.0 1.0
CA A:THR281 4.8 17.8 1.0
N A:CYS284 5.0 17.9 0.5

Mercury binding site 3 out of 4 in 1lzj

Go back to Mercury Binding Sites List in 1lzj
Mercury binding site 3 out of 4 in the Glycosyltransferase B + Udp + H Antigen Acceptor


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 3 of Glycosyltransferase B + Udp + H Antigen Acceptor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg403

b:44.0
occ:0.50
SD A:MET288 2.5 30.9 1.0
SG A:CYS284 2.7 23.1 0.5
O A:HOH713 3.0 54.1 1.0
OD2 A:ASP302 3.1 25.2 0.5
CE A:MET288 3.5 30.3 1.0
CB A:CYS284 3.7 20.4 0.5
N A:HIS285 3.8 19.2 1.0
C A:CYS284 3.8 19.4 0.5
C A:CYS284 3.8 18.6 0.5
CB A:CYS284 3.8 18.4 0.5
CG A:ASP302 3.9 22.6 0.5
CA A:HIS285 3.9 21.8 1.0
O A:CYS284 4.0 19.1 0.5
O A:CYS284 4.0 19.9 0.5
CG A:MET288 4.1 24.4 1.0
O A:HOH669 4.1 52.6 1.0
CB A:ASP302 4.1 19.9 0.5
CA A:CYS284 4.4 19.2 0.5
CA A:CYS284 4.5 17.7 0.5
CB A:HIS285 4.6 24.4 1.0
CB A:ASP302 4.6 21.2 0.5
CB A:MET288 4.6 21.6 1.0
OD1 A:ASP302 4.7 24.6 0.5
O A:THR281 4.9 17.8 1.0
CA A:ASP302 5.0 18.8 0.5

Mercury binding site 4 out of 4 in 1lzj

Go back to Mercury Binding Sites List in 1lzj
Mercury binding site 4 out of 4 in the Glycosyltransferase B + Udp + H Antigen Acceptor


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 4 of Glycosyltransferase B + Udp + H Antigen Acceptor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg404

b:32.6
occ:0.50
O A:HOH629 2.3 18.3 1.0
O A:HOH661 2.4 24.3 1.0
O A:HOH635 3.3 58.8 1.0
N A:VAL210 3.5 10.7 1.0
O A:VAL210 3.5 13.6 1.0
C A:CYS209 3.6 11.1 1.0
C A:VAL210 3.8 12.3 1.0
CB A:CYS209 3.8 10.9 1.0
O A:CYS209 3.9 11.3 1.0
CA A:VAL210 3.9 11.7 1.0
O A:HOH537 3.9 19.5 1.0
CA A:CYS209 4.1 12.9 1.0
CE2 A:PHE270 4.2 16.2 1.0
N A:ASP211 4.5 13.0 1.0
CZ A:PHE270 4.6 17.3 1.0
O A:GLY267 4.6 14.6 1.0
OD1 A:ASP211 4.7 19.6 1.0
CD1 A:PHE121 4.8 23.9 1.0
O A:THR119 4.8 15.0 1.0
CE1 A:PHE121 4.9 25.2 1.0

Reference:

S.I.Patenaude, N.O.Seto, S.N.Borisova, A.Szpacenko, S.L.Marcus, M.M.Palcic, S.V.Evans. The Structural Basis For Specificity in Human Abo(H) Blood Group Biosynthesis. Nat.Struct.Biol. V. 9 685 2002.
ISSN: ISSN 1072-8368
PubMed: 12198488
DOI: 10.1038/NSB832
Page generated: Sun Dec 13 19:03:56 2020

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