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Mercury in PDB 1miu: Structure of A BRCA2-DSS1 Complex

Protein crystallography data

The structure of Structure of A BRCA2-DSS1 Complex, PDB code: 1miu was solved by H.Yang, P.D.Jeffrey, J.Miller, E.Kinnucan, Y.Sun, N.H.Thoma, N.Zheng, P.L.Chen, W.H.Lee, N.P.Pavletich, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 3.10
Space group C 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 160.509, 228.271, 81.715, 90.00, 90.00, 90.00
R / Rfree (%) 25.6 / 31

Mercury Binding Sites:

The binding sites of Mercury atom in the Structure of A BRCA2-DSS1 Complex (pdb code 1miu). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 5 binding sites of Mercury where determined in the Structure of A BRCA2-DSS1 Complex, PDB code: 1miu:
Jump to Mercury binding site number: 1; 2; 3; 4; 5;

Mercury binding site 1 out of 5 in 1miu

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Mercury binding site 1 out of 5 in the Structure of A BRCA2-DSS1 Complex


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Structure of A BRCA2-DSS1 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg101

b:0.4
occ:0.51
O A:ALA2685 2.5 0.8 1.0
SG A:CYS2686 2.6 0.4 1.0
O A:ASP2684 3.0 0.0 1.0
CD1 A:LEU2597 3.2 77.3 1.0
O A:LEU2597 3.3 75.7 1.0
CD1 A:LEU2695 3.4 0.6 1.0
C A:ALA2685 3.7 0.0 1.0
C A:LEU2597 3.9 69.9 1.0
CB A:CYS2686 4.0 0.1 1.0
CA A:LEU2597 4.0 68.5 1.0
CB A:LEU2597 4.1 70.8 1.0
C A:ASP2684 4.2 0.9 1.0
CG A:LEU2597 4.3 75.3 1.0
N A:CYS2686 4.6 0.5 1.0
CA A:ALA2685 4.6 0.6 1.0
O A:CYS2686 4.7 0.5 1.0
CA A:CYS2686 4.8 0.5 1.0
CD A:PRO2692 4.8 0.5 1.0
N A:ALA2685 4.9 0.9 1.0
CG A:LEU2695 4.9 0.1 1.0

Mercury binding site 2 out of 5 in 1miu

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Mercury binding site 2 out of 5 in the Structure of A BRCA2-DSS1 Complex


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of Structure of A BRCA2-DSS1 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg102

b:0.1
occ:0.50
CB A:CYS3045 2.9 0.8 1.0
SG A:CYS3045 3.3 97.7 1.0
CA A:CYS3045 4.3 0.8 1.0
CD2 A:LEU2979 4.4 0.6 1.0
O A:SER2989 4.4 94.4 1.0
OG A:SER2989 4.6 0.7 1.0
O A:PHE2984 4.7 0.6 1.0
CG1 A:VAL2991 4.7 70.9 1.0
O A:GLN2985 4.8 0.9 1.0
N A:CYS3045 4.8 0.1 1.0
CA A:SER2989 5.0 0.8 1.0

Mercury binding site 3 out of 5 in 1miu

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Mercury binding site 3 out of 5 in the Structure of A BRCA2-DSS1 Complex


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 3 of Structure of A BRCA2-DSS1 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg103

b:1.0
occ:0.50
CB A:CYS2988 3.0 0.1 1.0
O A:PRO2987 3.5 0.6 1.0
C A:PRO2987 3.5 0.5 1.0
N A:CYS2988 3.7 0.5 1.0
CB A:PRO2987 3.7 0.4 1.0
CA A:CYS2988 4.0 0.7 1.0
CA A:PRO2987 4.1 0.3 1.0
SG A:CYS2988 4.3 0.6 1.0
CD A:ARG2893 4.4 80.8 1.0
CG A:ARG2893 4.5 78.9 1.0
C A:CYS2988 4.8 0.2 1.0
OH A:TYR2747 4.8 88.3 1.0
NE A:ARG2893 4.8 92.1 1.0
CD A:GLU2990 4.8 80.8 1.0
OE2 A:GLU2990 4.9 75.7 1.0
CG A:ARG2745 4.9 70.2 1.0
NE2 A:GLN2969 4.9 0.8 1.0
CG A:GLU2990 5.0 82.3 1.0

Mercury binding site 4 out of 5 in 1miu

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Mercury binding site 4 out of 5 in the Structure of A BRCA2-DSS1 Complex


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 4 of Structure of A BRCA2-DSS1 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg104

b:0.9
occ:0.50
SG A:CYS2567 2.7 97.2 1.0
CD1 B:LEU10 3.2 100.0 1.0
CA A:CYS2567 3.4 0.4 1.0
CB A:CYS2567 3.5 0.2 1.0
CD2 A:LEU2552 4.0 0.2 1.0
O A:ARG2566 4.1 0.1 1.0
SD A:MET2555 4.1 0.7 1.0
C A:CYS2567 4.3 0.8 1.0
O A:CYS2567 4.3 0.6 1.0
N A:CYS2567 4.4 1.0 1.0
CG B:LEU10 4.4 0.0 1.0
CD2 B:LEU10 4.5 0.6 1.0
CE A:MET2555 4.5 0.3 1.0
C A:ARG2566 4.6 0.7 1.0
CD A:ARG2572 4.8 0.4 1.0
CB B:LEU10 4.9 0.5 1.0
CD1 A:PHE2563 4.9 0.9 1.0
CG A:ARG2572 4.9 0.9 1.0

Mercury binding site 5 out of 5 in 1miu

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Mercury binding site 5 out of 5 in the Structure of A BRCA2-DSS1 Complex


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 5 of Structure of A BRCA2-DSS1 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg105

b:0.0
occ:0.50
SG A:CYS3016 3.4 0.9 1.0
O A:GLU3015 4.2 0.2 1.0
CA A:CYS3016 4.5 0.4 1.0
CB A:CYS3016 4.5 0.4 1.0
C A:GLU3015 4.6 0.9 1.0
N A:CYS3016 4.7 0.2 1.0

Reference:

H.Yang, P.D.Jeffrey, J.Miller, E.Kinnucan, Y.Sun, N.H.Thoma, N.Zheng, P.L.Chen, W.H.Lee, N.P.Pavletich. BRCA2 Function in Dna Binding and Recombination From A BRCA2-DSS1-Ssdna Structure Science V. 297 1837 2002.
ISSN: ISSN 0036-8075
PubMed: 12228710
DOI: 10.1126/SCIENCE.297.5588.1837
Page generated: Sun Dec 13 19:03:58 2020

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