Atomistry » Mercury » PDB 1of5-1rsr » 1ope
Atomistry »
  Mercury »
    PDB 1of5-1rsr »
      1ope »

Mercury in PDB 1ope: Deletion Mutant of Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart

Enzymatic activity of Deletion Mutant of Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart

All present enzymatic activity of Deletion Mutant of Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart:
2.8.3.5;

Protein crystallography data

The structure of Deletion Mutant of Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart, PDB code: 1ope was solved by A.M.Coros, L.Swenson, W.T.Wolodko, M.E.Fraser, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.13 / 2.50
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 147.640, 68.700, 103.500, 90.00, 99.58, 90.00
R / Rfree (%) 18 / 23.5

Other elements in 1ope:

The structure of Deletion Mutant of Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart also contains other interesting chemical elements:

Potassium (K) 2 atoms

Mercury Binding Sites:

The binding sites of Mercury atom in the Deletion Mutant of Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart (pdb code 1ope). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 4 binding sites of Mercury where determined in the Deletion Mutant of Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart, PDB code: 1ope:
Jump to Mercury binding site number: 1; 2; 3; 4;

Mercury binding site 1 out of 4 in 1ope

Go back to Mercury Binding Sites List in 1ope
Mercury binding site 1 out of 4 in the Deletion Mutant of Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Deletion Mutant of Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg482

b:43.1
occ:0.30
NE2 A:HIS157 2.4 29.3 1.0
O A:HOH519 2.5 32.6 1.0
CE1 A:HIS157 3.1 28.1 1.0
CD2 A:HIS157 3.5 25.8 1.0
ND1 A:HIS157 4.3 28.9 1.0
OH A:TYR122 4.4 21.2 1.0
CG A:HIS157 4.5 26.2 1.0

Mercury binding site 2 out of 4 in 1ope

Go back to Mercury Binding Sites List in 1ope
Mercury binding site 2 out of 4 in the Deletion Mutant of Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of Deletion Mutant of Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg483

b:49.0
occ:0.30
NE2 A:HIS411 2.5 73.0 1.0
CD2 A:HIS411 3.3 72.5 1.0
CE1 A:HIS411 3.5 73.1 1.0
O A:LYS461 4.2 46.0 1.0
CG A:HIS411 4.5 72.2 1.0
ND1 A:HIS411 4.5 72.5 1.0

Mercury binding site 3 out of 4 in 1ope

Go back to Mercury Binding Sites List in 1ope
Mercury binding site 3 out of 4 in the Deletion Mutant of Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 3 of Deletion Mutant of Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg482

b:59.5
occ:0.30
NE2 B:HIS411 2.3 66.0 1.0
CE1 B:HIS411 3.0 65.5 1.0
CD2 B:HIS411 3.4 64.9 1.0
O B:LYS461 3.6 56.8 1.0
ND1 B:HIS411 4.1 64.9 1.0
CG B:HIS411 4.3 63.6 1.0
C B:LYS461 4.8 56.5 1.0

Mercury binding site 4 out of 4 in 1ope

Go back to Mercury Binding Sites List in 1ope
Mercury binding site 4 out of 4 in the Deletion Mutant of Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 4 of Deletion Mutant of Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg483

b:46.5
occ:0.30
NE2 B:HIS157 2.3 28.8 1.0
CD2 B:HIS157 3.3 25.9 1.0
CE1 B:HIS157 3.3 28.6 1.0
ND1 B:HIS157 4.4 26.5 1.0
CG B:HIS157 4.4 26.9 1.0
OH B:TYR122 4.6 23.7 1.0

Reference:

A.M.Coros, L.Swenson, W.T.Wolodko, M.E.Fraser. Structure of the Coa Transferase From Pig Heart to 1.7 A Resolution. Acta Crystallogr.,Sect.D V. 60 1717 2004.
ISSN: ISSN 0907-4449
PubMed: 15388917
DOI: 10.1107/S0907444904017974
Page generated: Sun Aug 11 01:00:59 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy