Atomistry » Mercury » PDB 1of5-1rsr » 1p5s
Atomistry »
  Mercury »
    PDB 1of5-1rsr »
      1p5s »

Mercury in PDB 1p5s: Structure and Function of the Calponin-Homology Domain of An Iqgap Protein From Schizosaccharomyces Pombe

Protein crystallography data

The structure of Structure and Function of the Calponin-Homology Domain of An Iqgap Protein From Schizosaccharomyces Pombe, PDB code: 1p5s was solved by C.H.Wang, M.K.Balasubramanian, T.Dokland, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 21.00 / 2.22
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 30.884, 68.666, 35.309, 90.00, 102.51, 90.00
R / Rfree (%) 19.7 / 24.6

Mercury Binding Sites:

The binding sites of Mercury atom in the Structure and Function of the Calponin-Homology Domain of An Iqgap Protein From Schizosaccharomyces Pombe (pdb code 1p5s). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 4 binding sites of Mercury where determined in the Structure and Function of the Calponin-Homology Domain of An Iqgap Protein From Schizosaccharomyces Pombe, PDB code: 1p5s:
Jump to Mercury binding site number: 1; 2; 3; 4;

Mercury binding site 1 out of 4 in 1p5s

Go back to Mercury Binding Sites List in 1p5s
Mercury binding site 1 out of 4 in the Structure and Function of the Calponin-Homology Domain of An Iqgap Protein From Schizosaccharomyces Pombe


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Structure and Function of the Calponin-Homology Domain of An Iqgap Protein From Schizosaccharomyces Pombe within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg191

b:7.5
occ:0.64
O A:HOH236 2.3 2.0 1.0
SG A:CYS139 2.4 14.8 1.0
O A:PHE120 2.7 20.1 1.0
O A:CYS139 3.0 8.0 1.0
ND1 A:HIS121 3.2 32.2 1.0
CB A:CYS139 3.4 9.6 1.0
C A:PHE120 3.4 20.7 1.0
CA A:CYS139 3.5 8.7 1.0
C A:CYS139 3.6 10.5 1.0
CA A:HIS121 3.8 24.2 0.0
N A:HIS121 4.0 20.2 1.0
CE1 A:HIS121 4.0 32.9 1.0
CB A:PHE120 4.1 19.3 1.0
CD1 A:ILE111 4.2 20.1 1.0
CG A:HIS121 4.2 33.7 1.0
N A:LEU143 4.3 12.9 1.0
CG2 A:ILE111 4.4 14.2 1.0
CB A:LEU143 4.4 9.2 1.0
CB A:HIS121 4.4 24.0 1.0
CB A:ALA142 4.4 9.2 1.0
CA A:PHE120 4.4 21.8 1.0
CB A:ILE111 4.5 14.9 1.0
CA A:LEU143 4.7 12.8 1.0
N A:ILE140 4.7 5.0 1.0
N A:CYS139 4.9 7.4 1.0
CG1 A:ILE111 5.0 18.3 1.0
C A:HIS121 5.0 20.6 1.0

Mercury binding site 2 out of 4 in 1p5s

Go back to Mercury Binding Sites List in 1p5s
Mercury binding site 2 out of 4 in the Structure and Function of the Calponin-Homology Domain of An Iqgap Protein From Schizosaccharomyces Pombe


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of Structure and Function of the Calponin-Homology Domain of An Iqgap Protein From Schizosaccharomyces Pombe within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg192

b:9.5
occ:0.53
SG A:CYS54 2.2 15.9 1.0
OE2 A:GLU53 2.2 16.5 1.0
O A:TRP50 2.7 11.1 1.0
NE1 A:TRP50 3.0 11.4 1.0
O A:HOH263 3.2 35.0 1.0
CD1 A:TRP50 3.2 12.6 1.0
CB A:CYS54 3.3 13.1 1.0
CD A:GLU53 3.3 38.3 1.0
N A:CYS54 3.3 12.9 1.0
CE2 A:TRP50 3.5 14.0 1.0
CA A:CYS54 3.5 13.0 1.0
CG A:TRP50 3.7 15.4 1.0
C A:TRP50 3.7 8.7 1.0
CG A:GLU53 3.8 28.3 1.0
CD2 A:TRP50 3.8 15.7 1.0
CB A:GLU53 4.0 17.6 1.0
C A:GLU53 4.0 15.9 1.0
O A:PRO154 4.2 19.8 0.0
CZ2 A:TRP50 4.2 12.7 1.0
CD A:PRO154 4.2 16.7 1.0
CA A:TRP50 4.3 9.9 1.0
OE1 A:GLU53 4.4 34.8 1.0
CB A:PRO154 4.5 15.6 1.0
CA A:GLU53 4.5 17.8 1.0
CB A:TRP50 4.6 13.3 1.0
CG A:PRO154 4.6 18.6 1.0
NZ A:LYS81 4.7 6.1 1.0
O A:GLU53 4.7 16.2 1.0
N A:PRO154 4.7 21.4 1.0
N A:ILE51 4.8 8.2 1.0
CE3 A:TRP50 4.8 16.3 1.0
C A:PRO154 4.9 16.2 1.0
N A:GLU53 5.0 17.7 1.0

Mercury binding site 3 out of 4 in 1p5s

Go back to Mercury Binding Sites List in 1p5s
Mercury binding site 3 out of 4 in the Structure and Function of the Calponin-Homology Domain of An Iqgap Protein From Schizosaccharomyces Pombe


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 3 of Structure and Function of the Calponin-Homology Domain of An Iqgap Protein From Schizosaccharomyces Pombe within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg193

b:4.1
occ:0.45
SG A:CYS42 2.5 22.7 1.0
O A:HOH246 2.6 15.8 1.0
O A:HOH244 2.9 28.0 1.0
CB A:CYS42 3.3 12.2 1.0
O A:TYR38 3.4 15.0 1.0
CD1 A:TYR38 3.5 22.0 1.0
O A:HOH228 3.5 28.6 1.0
CE1 A:TYR38 3.5 16.2 1.0
C A:TYR38 3.9 16.7 1.0
CA A:ASP39 4.0 17.5 1.0
CG A:TYR38 4.1 19.0 1.0
N A:ASP39 4.2 18.4 1.0
CZ A:TYR38 4.2 17.8 1.0
OD1 A:ASP39 4.2 17.9 1.0
O A:ASP39 4.4 9.8 1.0
CA A:CYS42 4.6 11.6 1.0
CD2 A:TYR38 4.6 18.0 1.0
C A:ASP39 4.6 13.8 1.0
NH1 A:ARG43 4.7 51.1 1.0
CE2 A:TYR38 4.7 20.2 1.0
N A:CYS42 4.7 12.4 1.0
CB A:TYR38 4.8 19.8 1.0
OH A:TYR38 4.9 15.9 1.0
CA A:TYR38 4.9 18.2 1.0

Mercury binding site 4 out of 4 in 1p5s

Go back to Mercury Binding Sites List in 1p5s
Mercury binding site 4 out of 4 in the Structure and Function of the Calponin-Homology Domain of An Iqgap Protein From Schizosaccharomyces Pombe


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 4 of Structure and Function of the Calponin-Homology Domain of An Iqgap Protein From Schizosaccharomyces Pombe within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg194

b:35.7
occ:0.30
O A:HOH282 2.6 26.4 1.0
O A:HOH260 2.6 29.9 1.0
CE1 A:HIS100 2.7 17.8 1.0
NE2 A:HIS100 3.4 16.5 1.0
CZ A:PHE98 3.7 13.3 1.0
ND1 A:HIS100 3.8 24.2 1.0
CE2 A:PHE98 3.9 13.7 1.0
CE1 A:PHE98 4.2 15.5 1.0
CB A:ASN71 4.4 12.1 1.0
CD2 A:PHE98 4.6 15.9 1.0
CD2 A:HIS100 4.7 23.5 1.0
CG A:HIS100 4.9 18.9 1.0
CD1 A:PHE98 4.9 16.5 1.0

Reference:

C.H.Wang, M.K.Balasubramanian, T.Dokland. Structure, Crystal Packing and Molecular Dynamics of the Calponin-Homology Domain of Schizosaccharomyces Pombe RNG2. Acta Crystallogr.,Sect.D V. 60 1396 2004.
ISSN: ISSN 0907-4449
PubMed: 15272162
DOI: 10.1107/S0907444904012983
Page generated: Wed Oct 28 18:40:19 2020

Last articles

Xe in 6AYK
Xe in 6QII
Xe in 6ASM
Xe in 5NSW
Xe in 6FY9
Xe in 5O1K
Xe in 5O27
Xe in 5M69
Xe in 5KPU
Xe in 5I63
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy