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Mercury in PDB 1pf5: Structural Genomics, Protein Yjgh

Protein crystallography data

The structure of Structural Genomics, Protein Yjgh, PDB code: 1pf5 was solved by R.Zhang, A.Joachimiak, A.Edwards, A.Savchenko, L.Xu, Midwest Center Forstructural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.16 / 2.50
Space group I 21 3
Cell size a, b, c (Å), α, β, γ (°) 127.737, 127.737, 127.737, 90.00, 90.00, 90.00
R / Rfree (%) 19.6 / 21.8

Mercury Binding Sites:

The binding sites of Mercury atom in the Structural Genomics, Protein Yjgh (pdb code 1pf5). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total only one binding site of Mercury was determined in the Structural Genomics, Protein Yjgh, PDB code: 1pf5:

Mercury binding site 1 out of 1 in 1pf5

Go back to Mercury Binding Sites List in 1pf5
Mercury binding site 1 out of 1 in the Structural Genomics, Protein Yjgh


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Structural Genomics, Protein Yjgh within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg132

b:86.0
occ:1.00
SG A:CYS69 2.7 51.0 1.0
O A:ARG127 3.3 53.6 1.0
OD2 A:ASP73 3.4 45.0 1.0
CB A:CYS69 3.4 44.4 1.0
CG A:ASP73 3.5 43.5 1.0
CA A:CYS69 3.5 41.3 1.0
O A:HOH487 3.6 55.6 1.0
O A:GLY68 3.8 45.5 1.0
CB A:ASP73 3.9 38.6 1.0
OD1 A:ASP73 3.9 46.3 1.0
N A:CYS69 4.0 41.1 1.0
C A:GLY68 4.1 43.1 1.0
CA A:ILE128 4.2 69.6 1.0
CG1 A:ILE128 4.3 69.8 1.0
C A:ARG127 4.3 56.0 1.0
CG2 A:ILE128 4.6 68.6 1.0
CD A:PRO129 4.6 88.1 1.0
CB A:ILE128 4.6 67.3 1.0
N A:ILE128 4.7 62.3 1.0
C A:CYS69 4.8 41.1 1.0
N A:THR70 4.9 39.5 1.0
O A:ALA67 5.0 44.5 1.0

Reference:

R.Zhang, A.Joachimiak, A.Edwards, A.Savchenko, L.Xu. The 2.5A Crystal Structure of Protein Yjgh From E. Coli To Be Published.
Page generated: Sun Dec 13 19:04:33 2020

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