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Mercury in PDB 1plq: Crystal Structure of the Eukaryotic Dna Polymerase Processivity Factor Pcna

Protein crystallography data

The structure of Crystal Structure of the Eukaryotic Dna Polymerase Processivity Factor Pcna, PDB code: 1plq was solved by T.S.R.Krishna, X.-P.Kong, S.Gary, P.M.Burgers, J.Kuriyan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 5.00 / 2.30
Space group P 21 3
Cell size a, b, c (Å), α, β, γ (°) 121.200, 121.200, 121.200, 90.00, 90.00, 90.00
R / Rfree (%) 18.7 / n/a

Mercury Binding Sites:

The binding sites of Mercury atom in the Crystal Structure of the Eukaryotic Dna Polymerase Processivity Factor Pcna (pdb code 1plq). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 2 binding sites of Mercury where determined in the Crystal Structure of the Eukaryotic Dna Polymerase Processivity Factor Pcna, PDB code: 1plq:
Jump to Mercury binding site number: 1; 2;

Mercury binding site 1 out of 2 in 1plq

Go back to Mercury Binding Sites List in 1plq
Mercury binding site 1 out of 2 in the Crystal Structure of the Eukaryotic Dna Polymerase Processivity Factor Pcna


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Crystal Structure of the Eukaryotic Dna Polymerase Processivity Factor Pcna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg501

b:29.5
occ:1.00
SG A:CYS62 2.4 24.2 1.0
SG A:CYS30 2.5 23.4 1.0
O A:MET1 2.9 23.3 1.0
CB A:CYS30 3.3 12.2 1.0
CB A:CYS62 3.3 24.1 1.0
C A:CYS30 3.4 25.4 1.0
O A:CYS30 3.4 23.1 1.0
O A:HIS64 3.6 25.2 1.0
O A:HOH629 3.6 18.6 1.0
N A:LYS31 3.6 21.8 1.0
C A:MET1 3.8 24.9 1.0
CA A:PRO65 3.9 18.8 1.0
CA A:CYS30 3.9 19.1 1.0
CA A:LYS31 4.0 23.2 1.0
N A:VAL66 4.1 19.1 1.0
OH A:TYR60 4.1 21.1 1.0
C A:HIS64 4.1 21.0 1.0
CA A:CYS62 4.1 22.4 1.0
N A:PRO65 4.2 19.7 1.0
C A:PRO65 4.3 22.1 1.0
CA A:LEU2 4.4 26.0 1.0
N A:LEU2 4.5 25.1 1.0
C A:LYS31 4.5 21.7 1.0
N A:MET1 4.5 21.4 1.0
CG2 A:VAL66 4.6 11.4 1.0
O A:LYS31 4.6 21.3 1.0
N A:CYS30 4.8 15.3 1.0
O A:ARG61 4.8 24.0 1.0
CA A:MET1 4.8 24.4 1.0
CZ A:TYR60 4.9 26.2 1.0
C A:CYS62 4.9 24.3 1.0
N A:HIS64 5.0 24.2 1.0
CB A:VAL66 5.0 20.0 1.0

Mercury binding site 2 out of 2 in 1plq

Go back to Mercury Binding Sites List in 1plq
Mercury binding site 2 out of 2 in the Crystal Structure of the Eukaryotic Dna Polymerase Processivity Factor Pcna


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of Crystal Structure of the Eukaryotic Dna Polymerase Processivity Factor Pcna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg502

b:50.9
occ:0.60
SG A:CYS22 2.6 49.8 1.0
O A:LYS20 2.6 40.4 1.0
O A:GLY18 2.8 29.2 1.0
NZ A:LYS217 3.2 60.5 1.0
CD A:LYS217 3.3 47.2 1.0
O A:ASP214 3.5 38.6 1.0
C A:GLY18 3.6 27.1 1.0
CE A:LYS217 3.7 57.1 1.0
CB A:CYS22 3.8 51.8 1.0
C A:LYS20 3.8 44.5 1.0
CB A:ASP214 3.9 30.6 1.0
N A:CYS22 3.9 54.6 1.0
C A:PHE19 3.9 34.0 1.0
C A:ASP214 4.0 25.4 1.0
O A:PHE19 4.1 39.6 1.0
CA A:ASP214 4.1 24.9 1.0
N A:LYS20 4.1 38.8 1.0
O A:ASP17 4.2 27.5 1.0
N A:PHE19 4.3 28.1 1.0
CA A:GLY18 4.4 26.4 1.0
CA A:PHE19 4.4 30.4 1.0
CA A:CYS22 4.5 48.8 1.0
CA A:LYS20 4.5 42.3 1.0
CG A:LYS217 4.6 40.9 1.0
CG A:ASP214 4.6 36.3 1.0
CE2 A:PHE248 4.7 18.0 1.0
OD1 A:ASP214 4.8 47.5 1.0
N A:ASP21 4.9 46.3 1.0
CB A:LYS217 4.9 43.2 1.0
CB A:ASP21 4.9 62.3 1.0

Reference:

T.S.Krishna, X.P.Kong, S.Gary, P.M.Burgers, J.Kuriyan. Crystal Structure of the Eukaryotic Dna Polymerase Processivity Factor Pcna. Cell(Cambridge,Mass.) V. 79 1233 1994.
ISSN: ISSN 0092-8674
PubMed: 8001157
DOI: 10.1016/0092-8674(94)90014-0
Page generated: Wed Oct 28 18:40:24 2020

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