Chemical elements
  Mercury
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    PDB 12ca-1dr4
    PDB 1dr5-1ht3
    PDB 1hzx-1mms
    PDB 1moo-1rhy
      1moo
      1mrr
      1mua
      1mxr
      1n1b
      1n1m
      1naq
      1nu6
      1nu7
      1nu9
      1o9l
      1obh
      1of5
      1okl
      1okm
      1okn
      1ope
      1p5s
      1pf5
      1pfr
      1pim
      1piu
      1piy
      1piz
      1pj0
      1pj1
      1pj8
      1plq
      1pm2
      1ppo
      1ptk
      1pvm
      1qai
      1qbz
      1qd9
      1qml
      1qz4
      1r0g
      1r65
      1r76
      1r7t
      1r7u
      1r7v
      1r7x
      1r7y
      1r80
      1r81
      1r82
      1r94
      1rhy
    PDB 1rnr-1zfk
    PDB 1zfq-2geh
    PDB 2gv9-2wcd
    PDB 2wiu-3k34
    PDB 3k4o-9ca2

Mercury in the structure of Crystal Structure Of Manganese Substituted R2-D84E (D84E Mutant Of the R2 Subunit of E. Coli Ribonucleotide Reductase) (pdb 1pm2)






The binding sites of Mercury atom in the structure of Crystal Structure Of Manganese Substituted R2-D84E (D84E Mutant Of the R2 Subunit of E. Coli Ribonucleotide Reductase) (pdb code 1pm2). This binding sites where shown with 5.0 Angstroms radius around Mercury atom.
The 1pm2 structure was solved by W.C.VOEGTLI, M.SOMMERHALTER, J.BALDWIN, L.SALEH, J.M.BOLLINGERJR., A.C.ROSENZWEIG, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)25.0-1.8
Space groupP212121
a (A)73.950
b (A)83.940
c (A)114.340
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)18.5
Rfree (%)21.5


Mercury Binding Sites:

Mercury binding site 1 out of 14 in 1pm2


Mercury binding site 1 out of 14 in 1pm2
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stereopicture of Mercury binding site 1 out of 14 in 1pm2
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Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Mercury in the PDB 1pm2. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Mercury atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Tyr194, A: Met198, A: Ala265, A: Cys268, A: Lys269, A: Cys272, A: Leu321, A: Hg609, A: Hoh667,

conact list:


AtomAtomDistance (A)
HgCE2 A:Tyr1943.80
HgCZ A:Tyr1943.67
HgCE1 A:Tyr1944.95
HgOH A:Tyr1942.64
HgCE A:Met1984.03
HgO A:Ala2653.55
HgC A:Ala2654.41
HgCB A:Ala2654.76
HgCA A:Ala2654.65
HgO A:Cys2684.65
HgC A:Cys2684.83
HgO A:Lys2694.54
HgN A:Lys2694.51
HgCB A:Lys2694.16
HgC A:Lys2694.70
HgCA A:Lys2693.81
HgCB A:Cys2723.32
HgSG A:Cys2722.45
HgCA A:Cys2724.77
HgCD2 A:Leu3214.00
HgCG A:Leu3214.82
HgHG A:Hg6093.82
HgO A:Hoh6674.44

interactive model:


Mercury binding site 2 out of 14 in 1pm2


Mercury binding site 2 out of 14 in 1pm2
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stereopicture of Mercury binding site 2 out of 14 in 1pm2
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Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Mercury in the PDB 1pm2. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Mercury atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Ile153, A: Tyr156, A: Tyr157, A: Cys196, A: Leu197, A: Ser199, A: Val200, A: Hg610,

conact list:


AtomAtomDistance (A)
HgO A:Ile1534.66
HgCB A:Tyr1564.07
HgCD1 A:Tyr1564.26
HgC A:Tyr1564.58
HgCG A:Tyr1564.41
HgCA A:Tyr1564.99
HgN A:Tyr1574.15
HgCB A:Tyr1574.71
HgCE2 A:Tyr1574.16
HgCD1 A:Tyr1573.61
HgCD2 A:Tyr1574.14
HgCZ A:Tyr1573.93
HgCE1 A:Tyr1573.64
HgCG A:Tyr1573.89
HgOH A:Tyr1574.66
HgCA A:Tyr1574.42
HgO A:Cys1963.15
HgN A:Cys1964.86
HgCB A:Cys1963.38
HgSG A:Cys1962.24
HgC A:Cys1963.61
HgCA A:Cys1963.44
HgN A:Leu1974.80
HgCB A:Ser1994.25
HgOG A:Ser1994.91
HgN A:Val2004.67
HgCB A:Val2004.96
HgCG2 A:Val2003.64
HgHG A:Hg6103.13

interactive model:


Mercury binding site 3 out of 14 in 1pm2


Mercury binding site 3 out of 14 in 1pm2
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stereopicture of Mercury binding site 3 out of 14 in 1pm2
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Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Mercury in the PDB 1pm2. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Mercury atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Val210, A: Ala213, A: Cys214, A: Leu299, A: Leu304,

conact list:


AtomAtomDistance (A)
HgO A:Val2102.88
HgC A:Val2104.03
HgCG1 A:Val2104.10
HgCA A:Val2104.76
HgO A:Ala2134.74
HgN A:Ala2134.88
HgC A:Ala2133.99
HgCB A:Ala2133.76
HgCA A:Ala2134.42
HgN A:Cys2143.31
HgCB A:Cys2143.51
HgSG A:Cys2142.32
HgCA A:Cys2143.67
HgCD1 A:Leu2994.02
HgCB A:Leu3044.80
HgCD1 A:Leu3044.21
HgCG A:Leu3044.44

interactive model:


Mercury binding site 4 out of 14 in 1pm2


Mercury binding site 4 out of 14 in 1pm2
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stereopicture of Mercury binding site 4 out of 14 in 1pm2
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Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Mercury in the PDB 1pm2. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Mercury atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Tyr194, A: Leu195, A: Ile264, A: Ala265, A: Cys268, A: Lys269, A: Glu271, A: Cys272, A: Hg601,

conact list:


AtomAtomDistance (A)
HgCE2 A:Tyr1942.84
HgCD2 A:Tyr1943.32
HgCZ A:Tyr1944.02
HgCG A:Tyr1944.70
HgOH A:Tyr1944.33
HgCD1 A:Leu1954.90
HgCD2 A:Leu1952.80
HgCG A:Leu1954.05
HgO A:Ile2644.99
HgO A:Ala2654.52
HgO A:Cys2682.52
HgN A:Cys2684.92
HgCB A:Cys2683.44
HgC A:Cys2683.25
HgCA A:Cys2683.95
HgN A:Lys2694.09
HgC A:Lys2694.89
HgCA A:Lys2694.34
HgCB A:Glu2714.42
HgC A:Glu2714.54
HgCA A:Glu2714.91
HgN A:Cys2723.71
HgCB A:Cys2723.64
HgSG A:Cys2722.20
HgCA A:Cys2724.00
HgHG A:Hg6013.82

interactive model:


Mercury binding site 5 out of 14 in 1pm2


Mercury binding site 5 out of 14 in 1pm2
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stereopicture of Mercury binding site 5 out of 14 in 1pm2
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Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 5 of Mercury in the PDB 1pm2. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Mercury atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Leu95, A: Tyr157, A: Leu160, A: Cys196, A: Leu197, A: Val200, A: Hg602,

conact list:


AtomAtomDistance (A)
HgCD2 A:Leu954.26
HgCG A:Leu954.84
HgCD1 A:Tyr1573.88
HgCZ A:Tyr1574.05
HgCE1 A:Tyr1573.27
HgOH A:Tyr1574.25
HgCD2 A:Leu1604.80
HgO A:Cys1963.35
HgCB A:Cys1963.40
HgSG A:Cys1962.19
HgC A:Cys1963.44
HgCA A:Cys1963.98
HgN A:Leu1973.84
HgCD2 A:Leu1974.27
HgCG A:Leu1974.86
HgCA A:Leu1974.19
HgCB A:Val2004.13
HgCG2 A:Val2002.87
HgCG1 A:Val2004.95
HgHG A:Hg6023.13

interactive model:


Mercury binding site 6 out of 14 in 1pm2


Mercury binding site 6 out of 14 in 1pm2
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stereopicture of Mercury binding site 6 out of 14 in 1pm2
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Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 6 of Mercury in the PDB 1pm2. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Mercury atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Lys284, A: Asp302, A: Cys305, A: Gln306, A: Glu309, A: Arg328, A: Hoh732,

conact list:


AtomAtomDistance (A)
HgCE A:Lys2844.32
HgNZ A:Lys2844.22
HgO A:Asp3024.90
HgO A:Cys3053.67
HgCB A:Cys3053.45
HgSG A:Cys3052.35
HgC A:Cys3053.57
HgCA A:Cys3054.13
HgN A:Gln3063.72
HgCB A:Gln3064.81
HgCG A:Gln3064.31
HgCA A:Gln3064.03
HgOE1 A:Glu3093.91
HgOE2 A:Glu3093.35
HgCD A:Glu3093.51
HgCG A:Glu3094.01
HgNH2 A:Arg3284.88
HgO A:Hoh7324.38

interactive model:


Mercury binding site 7 out of 14 in 1pm2


Mercury binding site 7 out of 14 in 1pm2
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stereopicture of Mercury binding site 7 out of 14 in 1pm2
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Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 7 of Mercury in the PDB 1pm2. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Mercury atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Ile153, B: Tyr156, B: Tyr157, B: Cys196, B: Leu197, B: Ser199, B: Val200, B: Hg612,

conact list:


AtomAtomDistance (A)
HgO B:Ile1534.46
HgO B:Tyr1564.57
HgCB B:Tyr1563.61
HgC B:Tyr1564.13
HgCG B:Tyr1564.68
HgCA B:Tyr1564.52
HgN B:Tyr1573.90
HgCB B:Tyr1574.49
HgCE2 B:Tyr1573.98
HgCD1 B:Tyr1573.61
HgCD2 B:Tyr1573.86
HgCZ B:Tyr1573.92
HgCE1 B:Tyr1573.73
HgCG B:Tyr1573.69
HgOH B:Tyr1574.75
HgCA B:Tyr1574.25
HgO B:Cys1962.98
HgN B:Cys1964.76
HgCB B:Cys1963.34
HgSG B:Cys1962.22
HgC B:Cys1963.48
HgCA B:Cys1963.36
HgN B:Leu1974.68
HgCB B:Ser1994.24
HgOG B:Ser1994.40
HgN B:Val2004.52
HgCB B:Val2004.74
HgCG2 B:Val2003.41
HgHG B:Hg6123.04

interactive model:


Mercury binding site 8 out of 14 in 1pm2


Mercury binding site 8 out of 14 in 1pm2
Click to enlarge
stereopicture of Mercury binding site 8 out of 14 in 1pm2
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 8 of Mercury in the PDB 1pm2. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Mercury atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Tyr194, B: Leu195, B: Ala265, B: Cys268, B: Lys269, B: Glu271, B: Cys272, B: Hg606,

conact list:


AtomAtomDistance (A)
HgCE2 B:Tyr1943.98
HgCD2 B:Tyr1943.68
HgCG B:Tyr1944.88
HgCD2 B:Leu1953.81
HgCG B:Leu1954.63
HgO B:Ala2654.42
HgCA B:Ala2654.93
HgO B:Cys2682.61
HgN B:Cys2684.71
HgCB B:Cys2683.20
HgSG B:Cys2682.35
HgC B:Cys2683.34
HgCA B:Cys2683.87
HgN B:Lys2694.28
HgCA B:Lys2694.65
HgCB B:Glu2714.81
HgC B:Glu2714.94
HgN B:Cys2723.96
HgCB B:Cys2723.42
HgSG B:Cys2722.30
HgCA B:Cys2724.15
HgHG B:Hg6064.52

interactive model:


Mercury binding site 9 out of 14 in 1pm2


Mercury binding site 9 out of 14 in 1pm2
Click to enlarge
stereopicture of Mercury binding site 9 out of 14 in 1pm2
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 9 of Mercury in the PDB 1pm2. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Mercury atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Tyr194, B: Met198, B: Ala265, B: Cys268, B: Lys269, B: Cys272, B: Leu321, B: Hg605, B: Hoh780, B: Hoh806,

conact list:


AtomAtomDistance (A)
HgCE2 B:Tyr1943.64
HgCD2 B:Tyr1944.79
HgCZ B:Tyr1944.07
HgOH B:Tyr1943.57
HgCE B:Met1984.04
HgO B:Ala2653.86
HgC B:Ala2654.57
HgCB B:Ala2654.58
HgCA B:Ala2654.88
HgO B:Cys2684.97
HgO B:Lys2694.87
HgN B:Lys2694.85
HgCB B:Lys2694.44
HgCA B:Lys2694.11
HgCB B:Cys2724.11
HgSG B:Cys2724.29
HgCD2 B:Leu3213.87
HgCG B:Leu3214.76
HgHG B:Hg6054.52
HgO B:Hoh7804.51
HgO B:Hoh8062.33

interactive model:


Mercury binding site 10 out of 14 in 1pm2


Mercury binding site 10 out of 14 in 1pm2
Click to enlarge
stereopicture of Mercury binding site 10 out of 14 in 1pm2
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Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 10 of Mercury in the PDB 1pm2. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Mercury atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Val210, B: Ser211, B: Ala213, B: Cys214, B: Leu299, B: Leu304, B: Hg613,

conact list:


AtomAtomDistance (A)
HgO B:Val2102.80
HgCB B:Val2104.94
HgC B:Val2103.89
HgCG1 B:Val2103.94
HgCA B:Val2104.60
HgN B:Ser2114.88
HgO B:Ala2134.89
HgN B:Ala2134.70
HgC B:Ala2134.06
HgCB B:Ala2133.52
HgCA B:Ala2134.29
HgN B:Cys2143.45
HgCB B:Cys2143.80
HgSG B:Cys2143.27
HgCA B:Cys2143.98
HgCD1 B:Leu2993.87
HgCB B:Leu3044.42
HgCD1 B:Leu3043.73
HgCG B:Leu3043.88
HgCA B:Leu3044.98
HgHG B:Hg6132.61

interactive model:


Mercury binding site 11 out of 14 in 1pm2


Mercury binding site 11 out of 14 in 1pm2
Click to enlarge
stereopicture of Mercury binding site 11 out of 14 in 1pm2
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Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 11 of Mercury in the PDB 1pm2. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Mercury atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Lys284, B: Cys305, B: Gln306, B: Val308, B: Glu309, B: Hg611, B: Hoh764,

conact list:


AtomAtomDistance (A)
HgCB B:Lys2843.95
HgCE B:Lys2842.56
HgCD B:Lys2842.70
HgCG B:Lys2842.83
HgCA B:Lys2844.98
HgNZ B:Lys2843.38
HgO B:Cys3052.94
HgN B:Cys3054.82
HgCB B:Cys3053.45
HgSG B:Cys3052.40
HgC B:Cys3053.47
HgCA B:Cys3053.41
HgN B:Gln3064.65
HgCB B:Val3084.31
HgCG1 B:Val3084.57
HgN B:Glu3094.64
HgCB B:Glu3094.84
HgOE2 B:Glu3094.02
HgCD B:Glu3094.11
HgCG B:Glu3093.56
HgHG B:Hg6113.43
HgO B:Hoh7644.93

interactive model:


Mercury binding site 12 out of 14 in 1pm2


Mercury binding site 12 out of 14 in 1pm2
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stereopicture of Mercury binding site 12 out of 14 in 1pm2
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 12 of Mercury in the PDB 1pm2. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Mercury atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Cys305, B: Gln306, B: Glu309, B: Arg328, B: Hg608, B: Hoh752,

conact list:


AtomAtomDistance (A)
HgO B:Cys3053.70
HgCB B:Cys3053.61
HgSG B:Cys3052.43
HgC B:Cys3053.73
HgCA B:Cys3054.27
HgN B:Gln3063.99
HgOE1 B:Gln3063.52
HgCD B:Gln3064.41
HgCG B:Gln3064.81
HgCA B:Gln3064.29
HgOE1 B:Glu3093.36
HgCB B:Glu3094.83
HgOE2 B:Glu3093.31
HgCD B:Glu3093.20
HgCG B:Glu3093.76
HgNH2 B:Arg3284.60
HgHG B:Hg6083.43
HgO B:Hoh7523.57

interactive model:


Mercury binding site 13 out of 14 in 1pm2


Mercury binding site 13 out of 14 in 1pm2
Click to enlarge
stereopicture of Mercury binding site 13 out of 14 in 1pm2
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 13 of Mercury in the PDB 1pm2. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Mercury atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Leu95, B: Tyr157, B: Leu160, B: Cys196, B: Leu197, B: Val200, B: Hg604,

conact list:


AtomAtomDistance (A)
HgCD2 B:Leu954.53
HgCG B:Leu954.99
HgCE2 B:Tyr1574.92
HgCD1 B:Tyr1573.65
HgCZ B:Tyr1573.96
HgCE1 B:Tyr1573.18
HgCG B:Tyr1574.70
HgOH B:Tyr1574.34
HgCD2 B:Leu1604.57
HgO B:Cys1963.33
HgCB B:Cys1963.25
HgSG B:Cys1962.14
HgC B:Cys1963.40
HgCA B:Cys1963.88
HgN B:Leu1973.81
HgCD2 B:Leu1974.30
HgCG B:Leu1974.72
HgCA B:Leu1974.20
HgCB B:Val2004.27
HgCG2 B:Val2003.10
HgHG B:Hg6043.04

interactive model:


Mercury binding site 14 out of 14 in 1pm2


Mercury binding site 14 out of 14 in 1pm2
Click to enlarge
stereopicture of Mercury binding site 14 out of 14 in 1pm2
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 14 of Mercury in the PDB 1pm2. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Mercury atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Asn76, B: Val210, B: Ser211, B: Cys214, B: Trp286, B: Leu290, B: Leu304, B: Hg607, B: Hoh728,

conact list:


AtomAtomDistance (A)
HgCB B:Asn764.85
HgND2 B:Asn764.91
HgOD1 B:Asn763.65
HgCG B:Asn764.25
HgO B:Val2103.56
HgC B:Val2104.35
HgCG1 B:Val2104.49
HgO B:Ser2114.51
HgN B:Ser2114.69
HgC B:Ser2114.76
HgCA B:Ser2114.26
HgN B:Cys2144.01
HgCB B:Cys2142.76
HgSG B:Cys2142.17
HgCA B:Cys2143.90
HgCD1 B:Trp2864.88
HgNE1 B:Trp2864.63
HgCD2 B:Leu2903.60
HgCD1 B:Leu3044.06
HgCG B:Leu3044.99
HgHG B:Hg6072.61
HgO B:Hoh7284.97

interactive model:




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