Atomistry » Mercury » PDB 1of5-1rsr » 1pvm
Atomistry »
  Mercury »
    PDB 1of5-1rsr »
      1pvm »

Mercury in PDB 1pvm: Crystal Structure of A Conserved Cbs Domain Protein TA0289 of Unknown Function From Thermoplasma Acidophilum

Protein crystallography data

The structure of Crystal Structure of A Conserved Cbs Domain Protein TA0289 of Unknown Function From Thermoplasma Acidophilum, PDB code: 1pvm was solved by R.Zhang, A.Joachimiak, A.Edwards, A.Savchenko, L.Xu, Midwest Center Forstructural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.46 / 1.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 58.735, 62.838, 97.278, 90.00, 90.00, 90.00
R / Rfree (%) 19.4 / 22.8

Mercury Binding Sites:

The binding sites of Mercury atom in the Crystal Structure of A Conserved Cbs Domain Protein TA0289 of Unknown Function From Thermoplasma Acidophilum (pdb code 1pvm). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 2 binding sites of Mercury where determined in the Crystal Structure of A Conserved Cbs Domain Protein TA0289 of Unknown Function From Thermoplasma Acidophilum, PDB code: 1pvm:
Jump to Mercury binding site number: 1; 2;

Mercury binding site 1 out of 2 in 1pvm

Go back to Mercury Binding Sites List in 1pvm
Mercury binding site 1 out of 2 in the Crystal Structure of A Conserved Cbs Domain Protein TA0289 of Unknown Function From Thermoplasma Acidophilum


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Crystal Structure of A Conserved Cbs Domain Protein TA0289 of Unknown Function From Thermoplasma Acidophilum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg601

b:25.5
occ:1.00
SG A:CYS146 2.5 11.4 1.0
SG A:CYS174 2.5 13.5 1.0
SG A:CYS169 2.6 10.6 1.0
SG A:CYS149 2.6 13.9 1.0
CB A:CYS174 3.1 16.2 1.0
CB A:CYS146 3.2 10.3 1.0
CB A:CYS169 3.3 11.6 1.0
CB A:CYS149 3.4 16.1 1.0
N A:CYS149 3.7 16.2 1.0
CA A:CYS149 4.2 16.8 1.0
CB A:ASN171 4.2 18.6 1.0
CB A:TYR176 4.3 14.2 1.0
CB A:LYS148 4.4 12.4 1.0
CA A:CYS174 4.6 18.7 1.0
CA A:CYS146 4.6 11.0 1.0
C A:LYS148 4.6 15.7 1.0
O A:HOH694 4.7 19.3 1.0
CA A:CYS169 4.8 11.3 1.0
CA A:GLY152 4.8 12.7 1.0
ND2 A:ASN171 4.8 17.0 1.0
N A:GLY152 4.8 14.1 1.0
CA A:LYS148 4.9 14.0 1.0
N A:LYS148 4.9 12.7 1.0
CG A:LYS148 5.0 11.3 1.0
N A:TYR176 5.0 17.5 1.0

Mercury binding site 2 out of 2 in 1pvm

Go back to Mercury Binding Sites List in 1pvm
Mercury binding site 2 out of 2 in the Crystal Structure of A Conserved Cbs Domain Protein TA0289 of Unknown Function From Thermoplasma Acidophilum


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of Crystal Structure of A Conserved Cbs Domain Protein TA0289 of Unknown Function From Thermoplasma Acidophilum within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg602

b:24.9
occ:1.00
SG B:CYS146 2.5 10.0 1.0
SG B:CYS174 2.6 18.8 1.0
SG B:CYS169 2.6 12.3 1.0
SG B:CYS149 2.6 11.6 1.0
CB B:CYS174 3.1 22.4 1.0
CB B:CYS146 3.2 10.4 1.0
CB B:CYS169 3.3 11.5 1.0
CB B:CYS149 3.5 11.2 1.0
N B:CYS149 3.7 12.4 1.0
CB B:TYR176 4.1 15.3 1.0
CA B:CYS149 4.2 12.5 1.0
CB B:ASN171 4.3 19.9 1.0
CB B:LYS148 4.3 14.9 1.0
CA B:CYS174 4.6 24.5 1.0
CA B:CYS146 4.6 9.1 1.0
C B:LYS148 4.7 14.0 1.0
CA B:CYS169 4.7 10.9 1.0
O B:HOH847 4.8 30.5 1.0
ND2 B:ASN171 4.8 17.2 1.0
CA B:GLY152 4.8 15.2 1.0
N B:GLY152 4.8 16.4 1.0
CA B:LYS148 4.9 13.6 1.0
CG B:TYR176 4.9 14.6 1.0
CG B:LYS148 4.9 16.9 1.0
C B:CYS174 4.9 25.3 1.0
N B:LYS148 5.0 12.4 1.0

Reference:

M.Proudfoot, S.A.Sanders, A.Singer, R.Zhang, G.Brown, A.Binkowski, L.Xu, J.A.Lukin, A.G.Murzin, A.Joachimiak, C.H.Arrowsmith, A.M.Edwards, A.V.Savchenko, A.F.Yakunin. Biochemical and Structural Characterization of A Novel Family of Cystathionine Beta-Synthase Domain Proteins Fused to A Zn Ribbon-Like Domain J.Mol.Biol. V. 375 301 2008.
ISSN: ISSN 0022-2836
PubMed: 18021800
DOI: 10.1016/J.JMB.2007.10.060
Page generated: Wed Oct 28 18:40:25 2020

Last articles

Xe in 6AYK
Xe in 6QII
Xe in 6ASM
Xe in 5NSW
Xe in 6FY9
Xe in 5O1K
Xe in 5O27
Xe in 5M69
Xe in 5KPU
Xe in 5I63
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy