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Mercury in PDB 1pvm: Crystal Structure of A Conserved Cbs Domain Protein TA0289 of Unknown Function From Thermoplasma Acidophilum

Protein crystallography data

The structure of Crystal Structure of A Conserved Cbs Domain Protein TA0289 of Unknown Function From Thermoplasma Acidophilum, PDB code: 1pvm was solved by R.Zhang, A.Joachimiak, A.Edwards, A.Savchenko, L.Xu, Midwest Center Forstructural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.46 / 1.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 58.735, 62.838, 97.278, 90.00, 90.00, 90.00
R / Rfree (%) 19.4 / 22.8

Mercury Binding Sites:

The binding sites of Mercury atom in the Crystal Structure of A Conserved Cbs Domain Protein TA0289 of Unknown Function From Thermoplasma Acidophilum (pdb code 1pvm). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 2 binding sites of Mercury where determined in the Crystal Structure of A Conserved Cbs Domain Protein TA0289 of Unknown Function From Thermoplasma Acidophilum, PDB code: 1pvm:
Jump to Mercury binding site number: 1; 2;

Mercury binding site 1 out of 2 in 1pvm

Go back to Mercury Binding Sites List in 1pvm
Mercury binding site 1 out of 2 in the Crystal Structure of A Conserved Cbs Domain Protein TA0289 of Unknown Function From Thermoplasma Acidophilum


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Crystal Structure of A Conserved Cbs Domain Protein TA0289 of Unknown Function From Thermoplasma Acidophilum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg601

b:25.5
occ:1.00
SG A:CYS146 2.5 11.4 1.0
SG A:CYS174 2.5 13.5 1.0
SG A:CYS169 2.6 10.6 1.0
SG A:CYS149 2.6 13.9 1.0
CB A:CYS174 3.1 16.2 1.0
CB A:CYS146 3.2 10.3 1.0
CB A:CYS169 3.3 11.6 1.0
CB A:CYS149 3.4 16.1 1.0
N A:CYS149 3.7 16.2 1.0
CA A:CYS149 4.2 16.8 1.0
CB A:ASN171 4.2 18.6 1.0
CB A:TYR176 4.3 14.2 1.0
CB A:LYS148 4.4 12.4 1.0
CA A:CYS174 4.6 18.7 1.0
CA A:CYS146 4.6 11.0 1.0
C A:LYS148 4.6 15.7 1.0
O A:HOH694 4.7 19.3 1.0
CA A:CYS169 4.8 11.3 1.0
CA A:GLY152 4.8 12.7 1.0
ND2 A:ASN171 4.8 17.0 1.0
N A:GLY152 4.8 14.1 1.0
CA A:LYS148 4.9 14.0 1.0
N A:LYS148 4.9 12.7 1.0
CG A:LYS148 5.0 11.3 1.0
N A:TYR176 5.0 17.5 1.0

Mercury binding site 2 out of 2 in 1pvm

Go back to Mercury Binding Sites List in 1pvm
Mercury binding site 2 out of 2 in the Crystal Structure of A Conserved Cbs Domain Protein TA0289 of Unknown Function From Thermoplasma Acidophilum


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of Crystal Structure of A Conserved Cbs Domain Protein TA0289 of Unknown Function From Thermoplasma Acidophilum within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg602

b:24.9
occ:1.00
SG B:CYS146 2.5 10.0 1.0
SG B:CYS174 2.6 18.8 1.0
SG B:CYS169 2.6 12.3 1.0
SG B:CYS149 2.6 11.6 1.0
CB B:CYS174 3.1 22.4 1.0
CB B:CYS146 3.2 10.4 1.0
CB B:CYS169 3.3 11.5 1.0
CB B:CYS149 3.5 11.2 1.0
N B:CYS149 3.7 12.4 1.0
CB B:TYR176 4.1 15.3 1.0
CA B:CYS149 4.2 12.5 1.0
CB B:ASN171 4.3 19.9 1.0
CB B:LYS148 4.3 14.9 1.0
CA B:CYS174 4.6 24.5 1.0
CA B:CYS146 4.6 9.1 1.0
C B:LYS148 4.7 14.0 1.0
CA B:CYS169 4.7 10.9 1.0
O B:HOH847 4.8 30.5 1.0
ND2 B:ASN171 4.8 17.2 1.0
CA B:GLY152 4.8 15.2 1.0
N B:GLY152 4.8 16.4 1.0
CA B:LYS148 4.9 13.6 1.0
CG B:TYR176 4.9 14.6 1.0
CG B:LYS148 4.9 16.9 1.0
C B:CYS174 4.9 25.3 1.0
N B:LYS148 5.0 12.4 1.0

Reference:

M.Proudfoot, S.A.Sanders, A.Singer, R.Zhang, G.Brown, A.Binkowski, L.Xu, J.A.Lukin, A.G.Murzin, A.Joachimiak, C.H.Arrowsmith, A.M.Edwards, A.V.Savchenko, A.F.Yakunin. Biochemical and Structural Characterization of A Novel Family of Cystathionine Beta-Synthase Domain Proteins Fused to A Zn Ribbon-Like Domain J.Mol.Biol. V. 375 301 2008.
ISSN: ISSN 0022-2836
PubMed: 18021800
DOI: 10.1016/J.JMB.2007.10.060
Page generated: Sun Dec 13 19:04:43 2020

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