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Mercury in PDB 1qbz: The Crystal Structure of the Siv GP41 Ectodomain at 1.47 A

Protein crystallography data

The structure of The Crystal Structure of the Siv GP41 Ectodomain at 1.47 A, PDB code: 1qbz was solved by Z.-N.Yang, T.C.Mueser, J.Kaufman, S.J.Stahl, P.T.Wingfield, C.C.Hyde, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.00 / 1.47
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 91.124, 47.206, 77.465, 90.00, 100.83, 90.00
R / Rfree (%) 15.2 / 21.8

Other elements in 1qbz:

The structure of The Crystal Structure of the Siv GP41 Ectodomain at 1.47 A also contains other interesting chemical elements:

Chlorine (Cl) 3 atoms

Mercury Binding Sites:

The binding sites of Mercury atom in the The Crystal Structure of the Siv GP41 Ectodomain at 1.47 A (pdb code 1qbz). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 2 binding sites of Mercury where determined in the The Crystal Structure of the Siv GP41 Ectodomain at 1.47 A, PDB code: 1qbz:
Jump to Mercury binding site number: 1; 2;

Mercury binding site 1 out of 2 in 1qbz

Go back to Mercury Binding Sites List in 1qbz
Mercury binding site 1 out of 2 in the The Crystal Structure of the Siv GP41 Ectodomain at 1.47 A


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of The Crystal Structure of the Siv GP41 Ectodomain at 1.47 A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg8001

b:48.8
occ:0.25
O A:HOH8063 2.2 38.2 1.0
SD A:MET141 2.4 39.5 0.5
CE A:MET141 2.7 42.4 0.5
OE1 A:GLN41 3.5 27.5 1.0
CG A:MET141 4.1 26.6 1.0
CD A:GLN41 4.4 22.0 1.0
CG A:GLN41 4.7 20.7 1.0
CG A:GLN137 4.8 20.4 1.0
NE2 A:GLN137 4.8 18.3 1.0

Mercury binding site 2 out of 2 in 1qbz

Go back to Mercury Binding Sites List in 1qbz
Mercury binding site 2 out of 2 in the The Crystal Structure of the Siv GP41 Ectodomain at 1.47 A


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of The Crystal Structure of the Siv GP41 Ectodomain at 1.47 A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg8002

b:67.8
occ:0.25
O B:HOH8046 2.3 21.0 1.0
O B:HOH8052 2.3 29.8 0.5
CD B:ARG117 4.2 18.9 0.4
NE B:ARG117 4.2 17.5 0.4
CG B:ARG117 4.3 17.9 0.4
CG B:LYS118 4.3 18.2 1.0
O B:HOH8106 4.7 48.8 1.0
CG B:ARG117 4.8 17.9 0.4
CD B:ARG117 4.8 18.6 0.4
O B:HOH8107 4.9 41.0 1.0
CE B:LYS118 4.9 25.2 1.0

Reference:

Z.N.Yang, T.C.Mueser, J.Kaufman, S.J.Stahl, P.T.Wingfield, C.C.Hyde. The Crystal Structure of the Siv GP41 Ectodomain at 1.47 A Resolution. J.Struct.Biol. V. 126 131 1999.
ISSN: ISSN 1047-8477
PubMed: 10388624
DOI: 10.1006/JSBI.1999.4116
Page generated: Wed Oct 28 18:40:27 2020

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