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Mercury in PDB 1qz4: Structure of Ycfc Protein of Unknown Function Escherichia Coli

Protein crystallography data

The structure of Structure of Ycfc Protein of Unknown Function Escherichia Coli, PDB code: 1qz4 was solved by Z.Otwinowski, Midwest Center For Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.00 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 43.102, 62.749, 68.399, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Mercury Binding Sites:

The binding sites of Mercury atom in the Structure of Ycfc Protein of Unknown Function Escherichia Coli (pdb code 1qz4). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 10 binding sites of Mercury where determined in the Structure of Ycfc Protein of Unknown Function Escherichia Coli, PDB code: 1qz4:
Jump to Mercury binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Mercury binding site 1 out of 10 in 1qz4

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Mercury binding site 1 out of 10 in the Structure of Ycfc Protein of Unknown Function Escherichia Coli


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Structure of Ycfc Protein of Unknown Function Escherichia Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg301

b:21.0
occ:0.57
SG A:CYS16 2.1 23.6 1.0
O A:HOH384 3.0 36.1 1.0
CB A:CYS16 3.2 9.2 1.0
O A:LEU12 3.2 10.1 1.0
N A:CYS16 3.4 7.2 1.0
CA A:CYS16 3.5 9.9 1.0
CG2 A:THR89 3.6 10.0 1.0
CB A:THR89 4.1 13.4 1.0
C A:ILE15 4.2 5.3 1.0
CB A:ILE15 4.3 2.7 1.0
C A:LEU12 4.3 7.6 1.0
CG2 A:ILE15 4.3 7.6 1.0
CG1 A:VAL72 4.4 28.6 1.0
CD2 A:LEU12 4.7 12.8 1.0
CB A:VAL72 4.8 19.2 1.0
OG1 A:THR89 4.8 22.0 1.0
CB A:LEU12 4.8 9.3 1.0
CA A:LEU12 4.8 6.6 1.0
CA A:ILE15 4.8 5.1 1.0
CA A:LEU69 4.9 11.0 1.0
CE A:MET93 4.9 24.2 1.0
O A:ILE15 5.0 6.8 1.0
CB A:LEU69 5.0 8.6 1.0

Mercury binding site 2 out of 10 in 1qz4

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Mercury binding site 2 out of 10 in the Structure of Ycfc Protein of Unknown Function Escherichia Coli


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of Structure of Ycfc Protein of Unknown Function Escherichia Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg302

b:32.6
occ:0.52
CE1 A:HIS208 2.4 21.7 1.0
O A:HOH419 3.2 35.4 1.0
ND1 A:HIS208 3.3 34.8 1.0
NE2 A:HIS208 3.3 25.9 1.0
CG A:HIS208 4.4 29.1 1.0
CD2 A:HIS208 4.5 29.5 1.0

Mercury binding site 3 out of 10 in 1qz4

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Mercury binding site 3 out of 10 in the Structure of Ycfc Protein of Unknown Function Escherichia Coli


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 3 of Structure of Ycfc Protein of Unknown Function Escherichia Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg303

b:30.5
occ:0.38
SG A:CYS31 2.3 18.9 1.0
O A:HOH349 2.3 31.4 1.0
O A:HOH363 2.4 36.6 1.0
O A:CYS31 3.2 20.8 1.0
CD2 A:LEU36 3.2 16.0 1.0
C A:CYS31 3.5 22.7 1.0
CB A:CYS31 3.5 11.8 1.0
N A:CYS31 3.5 20.3 1.0
CA A:CYS31 3.6 24.2 1.0
HG A:HG308 3.8 25.2 0.2
CB A:LEU36 3.9 16.8 1.0
O A:ASP32 4.1 12.8 1.0
CG A:LEU36 4.2 11.0 1.0
C A:ASP32 4.2 11.0 1.0
CA A:ALA33 4.2 23.1 1.0
N A:ALA33 4.3 14.0 1.0
N A:ASP32 4.3 17.2 1.0
C A:HIS30 4.7 20.6 1.0
O A:HOH364 4.9 27.0 1.0
CD1 A:LEU36 4.9 18.1 1.0
CA A:ASP32 4.9 15.9 1.0
CB A:ALA33 5.0 26.3 1.0

Mercury binding site 4 out of 10 in 1qz4

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Mercury binding site 4 out of 10 in the Structure of Ycfc Protein of Unknown Function Escherichia Coli


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 4 of Structure of Ycfc Protein of Unknown Function Escherichia Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg304

b:33.6
occ:0.30
O A:HOH399 1.8 14.4 1.0
O A:HOH391 1.9 16.3 1.0
ND1 A:HIS27 2.3 27.4 1.0
CG A:HIS27 3.2 12.6 1.0
CE1 A:HIS27 3.3 33.1 1.0
CB A:HIS27 3.5 14.0 1.0
CA A:HIS27 4.0 14.0 1.0
O A:HIS27 4.2 28.0 1.0
CD2 A:HIS27 4.4 17.2 1.0
NE2 A:HIS27 4.4 15.9 1.0
O A:HOH335 4.5 35.9 1.0
C A:HIS27 4.6 30.1 1.0
N A:SER154 4.6 21.6 1.0
C A:GLY153 4.8 20.2 1.0
CA A:GLY153 5.0 14.8 1.0

Mercury binding site 5 out of 10 in 1qz4

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Mercury binding site 5 out of 10 in the Structure of Ycfc Protein of Unknown Function Escherichia Coli


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 5 of Structure of Ycfc Protein of Unknown Function Escherichia Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg305

b:37.8
occ:0.24
O A:HOH377 1.5 9.0 1.0
OE1 A:GLU121 2.2 34.6 1.0
HG A:HG306 2.2 39.3 0.2
CD A:GLU121 3.2 27.8 1.0
O A:HOH371 3.5 27.3 1.0
OE2 A:GLU121 3.5 16.4 1.0
NE2 A:HIS122 4.3 38.7 1.0
CE1 A:HIS122 4.5 33.8 1.0
CG A:GLU121 4.6 12.1 1.0

Mercury binding site 6 out of 10 in 1qz4

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Mercury binding site 6 out of 10 in the Structure of Ycfc Protein of Unknown Function Escherichia Coli


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 6 of Structure of Ycfc Protein of Unknown Function Escherichia Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg306

b:39.3
occ:0.23
HG A:HG305 2.2 37.8 0.2
O A:HOH371 2.4 27.3 1.0
NE2 A:HIS122 2.4 38.7 1.0
OE1 A:GLU121 2.4 34.6 1.0
CE1 A:HIS122 2.6 33.8 1.0
O A:HOH377 3.1 9.0 1.0
CD A:GLU121 3.4 27.8 1.0
CD2 A:HIS122 3.8 31.8 1.0
ND1 A:HIS122 3.9 33.3 1.0
OE2 A:GLU121 4.0 16.4 1.0
CG A:GLU121 4.4 12.1 1.0
CG A:HIS122 4.5 32.9 1.0

Mercury binding site 7 out of 10 in 1qz4

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Mercury binding site 7 out of 10 in the Structure of Ycfc Protein of Unknown Function Escherichia Coli


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 7 of Structure of Ycfc Protein of Unknown Function Escherichia Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg307

b:32.2
occ:0.22
ND1 A:HIS182 2.2 17.9 1.0
O A:HOH320 2.2 32.8 1.0
O A:HOH325 2.8 23.0 1.0
O4 A:PO4214 2.8 45.0 1.0
O A:GLY186 2.9 17.7 1.0
CE1 A:HIS182 3.0 18.8 1.0
CG A:HIS182 3.3 17.4 1.0
CB A:HIS182 3.6 14.5 1.0
CA A:HIS182 4.0 14.5 1.0
C A:GLY186 4.1 9.7 1.0
CA A:GLY187 4.2 19.1 1.0
NE2 A:HIS182 4.2 17.7 1.0
P A:PO4214 4.2 40.0 1.0
CD2 A:HIS182 4.3 20.2 1.0
O A:HIS182 4.5 18.1 1.0
NH2 A:ARG97 4.5 36.2 1.0
N A:GLY187 4.6 11.7 1.0
CZ A:ARG97 4.6 39.8 1.0
O3 A:PO4214 4.6 42.1 1.0
C A:HIS182 4.7 17.5 1.0
NH1 A:ARG97 4.8 34.5 1.0
O A:HOH368 4.9 28.4 1.0

Mercury binding site 8 out of 10 in 1qz4

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Mercury binding site 8 out of 10 in the Structure of Ycfc Protein of Unknown Function Escherichia Coli


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 8 of Structure of Ycfc Protein of Unknown Function Escherichia Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg308

b:25.2
occ:0.16
SG A:CYS31 2.0 18.9 1.0
CD1 A:LEU25 2.3 20.4 1.0
CG A:LEU25 2.6 25.5 1.0
CB A:CYS31 3.0 11.8 1.0
O A:LEU21 3.4 9.9 1.0
CD2 A:LEU25 3.5 38.4 1.0
HG A:HG303 3.8 30.5 0.4
CB A:LEU25 3.9 20.8 1.0
C A:LEU21 4.0 8.6 1.0
CB A:LEU21 4.1 8.3 1.0
CD1 A:LEU36 4.1 18.1 1.0
O A:HOH349 4.2 31.4 1.0
CD2 A:LEU36 4.3 16.0 1.0
OG1 A:THR170 4.3 7.8 1.0
CA A:CYS31 4.4 24.2 1.0
CA A:LEU21 4.5 12.6 1.0
N A:CYS31 4.6 20.3 1.0
CG A:LEU36 4.6 11.0 1.0
CA A:LEU25 4.8 20.2 1.0
CB A:LEU36 4.8 16.8 1.0
CD2 A:LEU21 4.9 10.6 1.0
N A:LEU25 4.9 10.3 1.0
N A:VAL22 4.9 10.7 1.0
CG A:LEU21 5.0 6.7 1.0

Mercury binding site 9 out of 10 in 1qz4

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Mercury binding site 9 out of 10 in the Structure of Ycfc Protein of Unknown Function Escherichia Coli


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 9 of Structure of Ycfc Protein of Unknown Function Escherichia Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg309

b:36.2
occ:0.16
ND1 A:HIS122 2.6 33.3 1.0
O A:ARG118 2.8 22.5 1.0
CE1 A:HIS122 3.5 33.8 1.0
CG A:HIS122 3.5 32.9 1.0
CB A:HIS122 3.8 22.4 1.0
C A:ARG118 3.9 17.8 1.0
CA A:GLN119 3.9 14.9 1.0
O A:GLN119 4.2 12.8 1.0
CE2 A:PHE123 4.3 18.1 1.0
N A:GLN119 4.3 15.0 1.0
CD2 A:PHE123 4.4 12.6 1.0
C A:GLN119 4.4 12.2 1.0
N A:HIS122 4.5 16.0 1.0
NE2 A:HIS122 4.6 38.7 1.0
CD2 A:HIS122 4.7 31.8 1.0
CA A:HIS122 4.8 16.9 1.0
CB A:GLU121 4.9 13.9 1.0

Mercury binding site 10 out of 10 in 1qz4

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Mercury binding site 10 out of 10 in the Structure of Ycfc Protein of Unknown Function Escherichia Coli


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 10 of Structure of Ycfc Protein of Unknown Function Escherichia Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg310

b:33.3
occ:0.15
CD1 A:LEU172 3.1 19.6 1.0
O A:LEU172 3.4 8.9 1.0
CB A:ARG176 3.5 15.3 1.0
N A:ARG176 3.7 9.6 1.0
CA A:ARG176 3.7 12.8 1.0
CD2 A:LEU109 3.7 16.0 1.0
CD1 A:ILE113 3.8 8.9 1.0
CG A:LEU172 4.0 14.7 1.0
CG2 A:ILE175 4.1 13.5 1.0
CG A:ARG176 4.1 16.3 1.0
O A:HOH355 4.3 28.1 1.0
C A:ILE175 4.3 11.6 1.0
CB A:ILE175 4.3 9.5 1.0
C A:LEU172 4.4 8.8 1.0
CG A:LEU109 4.4 13.6 1.0
CD1 A:LEU109 4.4 13.0 1.0
CD1 A:ILE142 4.6 21.1 1.0
O A:ILE175 4.9 4.8 1.0
CA A:LEU172 4.9 7.7 1.0
CA A:ILE175 4.9 10.1 1.0
CB A:LEU172 5.0 11.8 1.0
CG1 A:ILE113 5.0 11.9 1.0

Reference:

Z.Otwinowski, D.M.Borek, Y.Chen, T.Skarina, A.Savchenko, A.Edwards. Structure of A Hypothetical Protein Ycfc Coded By Escherichia Coli Genome. To Be Published.
Page generated: Sun Dec 13 19:04:50 2020

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