Mercury in PDB 1qz4: Structure of Ycfc Protein of Unknown Function Escherichia Coli
Protein crystallography data
The structure of Structure of Ycfc Protein of Unknown Function Escherichia Coli, PDB code: 1qz4
was solved by
Z.Otwinowski,
Midwest Center For Structural Genomics (Mcsg),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
25.00 /
2.00
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
43.102,
62.749,
68.399,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
n/a /
n/a
|
Mercury Binding Sites:
The binding sites of Mercury atom in the Structure of Ycfc Protein of Unknown Function Escherichia Coli
(pdb code 1qz4). This binding sites where shown within
5.0 Angstroms radius around Mercury atom.
In total 10 binding sites of Mercury where determined in the
Structure of Ycfc Protein of Unknown Function Escherichia Coli, PDB code: 1qz4:
Jump to Mercury binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Mercury binding site 1 out
of 10 in 1qz4
Go back to
Mercury Binding Sites List in 1qz4
Mercury binding site 1 out
of 10 in the Structure of Ycfc Protein of Unknown Function Escherichia Coli
Mono view
Stereo pair view
|
A full contact list of Mercury with other atoms in the Hg binding
site number 1 of Structure of Ycfc Protein of Unknown Function Escherichia Coli within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Hg301
b:21.0
occ:0.57
|
SG
|
A:CYS16
|
2.1
|
23.6
|
1.0
|
O
|
A:HOH384
|
3.0
|
36.1
|
1.0
|
CB
|
A:CYS16
|
3.2
|
9.2
|
1.0
|
O
|
A:LEU12
|
3.2
|
10.1
|
1.0
|
N
|
A:CYS16
|
3.4
|
7.2
|
1.0
|
CA
|
A:CYS16
|
3.5
|
9.9
|
1.0
|
CG2
|
A:THR89
|
3.6
|
10.0
|
1.0
|
CB
|
A:THR89
|
4.1
|
13.4
|
1.0
|
C
|
A:ILE15
|
4.2
|
5.3
|
1.0
|
CB
|
A:ILE15
|
4.3
|
2.7
|
1.0
|
C
|
A:LEU12
|
4.3
|
7.6
|
1.0
|
CG2
|
A:ILE15
|
4.3
|
7.6
|
1.0
|
CG1
|
A:VAL72
|
4.4
|
28.6
|
1.0
|
CD2
|
A:LEU12
|
4.7
|
12.8
|
1.0
|
CB
|
A:VAL72
|
4.8
|
19.2
|
1.0
|
OG1
|
A:THR89
|
4.8
|
22.0
|
1.0
|
CB
|
A:LEU12
|
4.8
|
9.3
|
1.0
|
CA
|
A:LEU12
|
4.8
|
6.6
|
1.0
|
CA
|
A:ILE15
|
4.8
|
5.1
|
1.0
|
CA
|
A:LEU69
|
4.9
|
11.0
|
1.0
|
CE
|
A:MET93
|
4.9
|
24.2
|
1.0
|
O
|
A:ILE15
|
5.0
|
6.8
|
1.0
|
CB
|
A:LEU69
|
5.0
|
8.6
|
1.0
|
|
Mercury binding site 2 out
of 10 in 1qz4
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Mercury Binding Sites List in 1qz4
Mercury binding site 2 out
of 10 in the Structure of Ycfc Protein of Unknown Function Escherichia Coli
Mono view
Stereo pair view
|
A full contact list of Mercury with other atoms in the Hg binding
site number 2 of Structure of Ycfc Protein of Unknown Function Escherichia Coli within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Hg302
b:32.6
occ:0.52
|
CE1
|
A:HIS208
|
2.4
|
21.7
|
1.0
|
O
|
A:HOH419
|
3.2
|
35.4
|
1.0
|
ND1
|
A:HIS208
|
3.3
|
34.8
|
1.0
|
NE2
|
A:HIS208
|
3.3
|
25.9
|
1.0
|
CG
|
A:HIS208
|
4.4
|
29.1
|
1.0
|
CD2
|
A:HIS208
|
4.5
|
29.5
|
1.0
|
|
Mercury binding site 3 out
of 10 in 1qz4
Go back to
Mercury Binding Sites List in 1qz4
Mercury binding site 3 out
of 10 in the Structure of Ycfc Protein of Unknown Function Escherichia Coli
Mono view
Stereo pair view
|
A full contact list of Mercury with other atoms in the Hg binding
site number 3 of Structure of Ycfc Protein of Unknown Function Escherichia Coli within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Hg303
b:30.5
occ:0.38
|
SG
|
A:CYS31
|
2.3
|
18.9
|
1.0
|
O
|
A:HOH349
|
2.3
|
31.4
|
1.0
|
O
|
A:HOH363
|
2.4
|
36.6
|
1.0
|
O
|
A:CYS31
|
3.2
|
20.8
|
1.0
|
CD2
|
A:LEU36
|
3.2
|
16.0
|
1.0
|
C
|
A:CYS31
|
3.5
|
22.7
|
1.0
|
CB
|
A:CYS31
|
3.5
|
11.8
|
1.0
|
N
|
A:CYS31
|
3.5
|
20.3
|
1.0
|
CA
|
A:CYS31
|
3.6
|
24.2
|
1.0
|
HG
|
A:HG308
|
3.8
|
25.2
|
0.2
|
CB
|
A:LEU36
|
3.9
|
16.8
|
1.0
|
O
|
A:ASP32
|
4.1
|
12.8
|
1.0
|
CG
|
A:LEU36
|
4.2
|
11.0
|
1.0
|
C
|
A:ASP32
|
4.2
|
11.0
|
1.0
|
CA
|
A:ALA33
|
4.2
|
23.1
|
1.0
|
N
|
A:ALA33
|
4.3
|
14.0
|
1.0
|
N
|
A:ASP32
|
4.3
|
17.2
|
1.0
|
C
|
A:HIS30
|
4.7
|
20.6
|
1.0
|
O
|
A:HOH364
|
4.9
|
27.0
|
1.0
|
CD1
|
A:LEU36
|
4.9
|
18.1
|
1.0
|
CA
|
A:ASP32
|
4.9
|
15.9
|
1.0
|
CB
|
A:ALA33
|
5.0
|
26.3
|
1.0
|
|
Mercury binding site 4 out
of 10 in 1qz4
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Mercury Binding Sites List in 1qz4
Mercury binding site 4 out
of 10 in the Structure of Ycfc Protein of Unknown Function Escherichia Coli
Mono view
Stereo pair view
|
A full contact list of Mercury with other atoms in the Hg binding
site number 4 of Structure of Ycfc Protein of Unknown Function Escherichia Coli within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Hg304
b:33.6
occ:0.30
|
O
|
A:HOH399
|
1.8
|
14.4
|
1.0
|
O
|
A:HOH391
|
1.9
|
16.3
|
1.0
|
ND1
|
A:HIS27
|
2.3
|
27.4
|
1.0
|
CG
|
A:HIS27
|
3.2
|
12.6
|
1.0
|
CE1
|
A:HIS27
|
3.3
|
33.1
|
1.0
|
CB
|
A:HIS27
|
3.5
|
14.0
|
1.0
|
CA
|
A:HIS27
|
4.0
|
14.0
|
1.0
|
O
|
A:HIS27
|
4.2
|
28.0
|
1.0
|
CD2
|
A:HIS27
|
4.4
|
17.2
|
1.0
|
NE2
|
A:HIS27
|
4.4
|
15.9
|
1.0
|
O
|
A:HOH335
|
4.5
|
35.9
|
1.0
|
C
|
A:HIS27
|
4.6
|
30.1
|
1.0
|
N
|
A:SER154
|
4.6
|
21.6
|
1.0
|
C
|
A:GLY153
|
4.8
|
20.2
|
1.0
|
CA
|
A:GLY153
|
5.0
|
14.8
|
1.0
|
|
Mercury binding site 5 out
of 10 in 1qz4
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Mercury Binding Sites List in 1qz4
Mercury binding site 5 out
of 10 in the Structure of Ycfc Protein of Unknown Function Escherichia Coli
Mono view
Stereo pair view
|
A full contact list of Mercury with other atoms in the Hg binding
site number 5 of Structure of Ycfc Protein of Unknown Function Escherichia Coli within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Hg305
b:37.8
occ:0.24
|
O
|
A:HOH377
|
1.5
|
9.0
|
1.0
|
OE1
|
A:GLU121
|
2.2
|
34.6
|
1.0
|
HG
|
A:HG306
|
2.2
|
39.3
|
0.2
|
CD
|
A:GLU121
|
3.2
|
27.8
|
1.0
|
O
|
A:HOH371
|
3.5
|
27.3
|
1.0
|
OE2
|
A:GLU121
|
3.5
|
16.4
|
1.0
|
NE2
|
A:HIS122
|
4.3
|
38.7
|
1.0
|
CE1
|
A:HIS122
|
4.5
|
33.8
|
1.0
|
CG
|
A:GLU121
|
4.6
|
12.1
|
1.0
|
|
Mercury binding site 6 out
of 10 in 1qz4
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Mercury Binding Sites List in 1qz4
Mercury binding site 6 out
of 10 in the Structure of Ycfc Protein of Unknown Function Escherichia Coli
Mono view
Stereo pair view
|
A full contact list of Mercury with other atoms in the Hg binding
site number 6 of Structure of Ycfc Protein of Unknown Function Escherichia Coli within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Hg306
b:39.3
occ:0.23
|
HG
|
A:HG305
|
2.2
|
37.8
|
0.2
|
O
|
A:HOH371
|
2.4
|
27.3
|
1.0
|
NE2
|
A:HIS122
|
2.4
|
38.7
|
1.0
|
OE1
|
A:GLU121
|
2.4
|
34.6
|
1.0
|
CE1
|
A:HIS122
|
2.6
|
33.8
|
1.0
|
O
|
A:HOH377
|
3.1
|
9.0
|
1.0
|
CD
|
A:GLU121
|
3.4
|
27.8
|
1.0
|
CD2
|
A:HIS122
|
3.8
|
31.8
|
1.0
|
ND1
|
A:HIS122
|
3.9
|
33.3
|
1.0
|
OE2
|
A:GLU121
|
4.0
|
16.4
|
1.0
|
CG
|
A:GLU121
|
4.4
|
12.1
|
1.0
|
CG
|
A:HIS122
|
4.5
|
32.9
|
1.0
|
|
Mercury binding site 7 out
of 10 in 1qz4
Go back to
Mercury Binding Sites List in 1qz4
Mercury binding site 7 out
of 10 in the Structure of Ycfc Protein of Unknown Function Escherichia Coli
Mono view
Stereo pair view
|
A full contact list of Mercury with other atoms in the Hg binding
site number 7 of Structure of Ycfc Protein of Unknown Function Escherichia Coli within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Hg307
b:32.2
occ:0.22
|
ND1
|
A:HIS182
|
2.2
|
17.9
|
1.0
|
O
|
A:HOH320
|
2.2
|
32.8
|
1.0
|
O
|
A:HOH325
|
2.8
|
23.0
|
1.0
|
O4
|
A:PO4214
|
2.8
|
45.0
|
1.0
|
O
|
A:GLY186
|
2.9
|
17.7
|
1.0
|
CE1
|
A:HIS182
|
3.0
|
18.8
|
1.0
|
CG
|
A:HIS182
|
3.3
|
17.4
|
1.0
|
CB
|
A:HIS182
|
3.6
|
14.5
|
1.0
|
CA
|
A:HIS182
|
4.0
|
14.5
|
1.0
|
C
|
A:GLY186
|
4.1
|
9.7
|
1.0
|
CA
|
A:GLY187
|
4.2
|
19.1
|
1.0
|
NE2
|
A:HIS182
|
4.2
|
17.7
|
1.0
|
P
|
A:PO4214
|
4.2
|
40.0
|
1.0
|
CD2
|
A:HIS182
|
4.3
|
20.2
|
1.0
|
O
|
A:HIS182
|
4.5
|
18.1
|
1.0
|
NH2
|
A:ARG97
|
4.5
|
36.2
|
1.0
|
N
|
A:GLY187
|
4.6
|
11.7
|
1.0
|
CZ
|
A:ARG97
|
4.6
|
39.8
|
1.0
|
O3
|
A:PO4214
|
4.6
|
42.1
|
1.0
|
C
|
A:HIS182
|
4.7
|
17.5
|
1.0
|
NH1
|
A:ARG97
|
4.8
|
34.5
|
1.0
|
O
|
A:HOH368
|
4.9
|
28.4
|
1.0
|
|
Mercury binding site 8 out
of 10 in 1qz4
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Mercury Binding Sites List in 1qz4
Mercury binding site 8 out
of 10 in the Structure of Ycfc Protein of Unknown Function Escherichia Coli
Mono view
Stereo pair view
|
A full contact list of Mercury with other atoms in the Hg binding
site number 8 of Structure of Ycfc Protein of Unknown Function Escherichia Coli within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Hg308
b:25.2
occ:0.16
|
SG
|
A:CYS31
|
2.0
|
18.9
|
1.0
|
CD1
|
A:LEU25
|
2.3
|
20.4
|
1.0
|
CG
|
A:LEU25
|
2.6
|
25.5
|
1.0
|
CB
|
A:CYS31
|
3.0
|
11.8
|
1.0
|
O
|
A:LEU21
|
3.4
|
9.9
|
1.0
|
CD2
|
A:LEU25
|
3.5
|
38.4
|
1.0
|
HG
|
A:HG303
|
3.8
|
30.5
|
0.4
|
CB
|
A:LEU25
|
3.9
|
20.8
|
1.0
|
C
|
A:LEU21
|
4.0
|
8.6
|
1.0
|
CB
|
A:LEU21
|
4.1
|
8.3
|
1.0
|
CD1
|
A:LEU36
|
4.1
|
18.1
|
1.0
|
O
|
A:HOH349
|
4.2
|
31.4
|
1.0
|
CD2
|
A:LEU36
|
4.3
|
16.0
|
1.0
|
OG1
|
A:THR170
|
4.3
|
7.8
|
1.0
|
CA
|
A:CYS31
|
4.4
|
24.2
|
1.0
|
CA
|
A:LEU21
|
4.5
|
12.6
|
1.0
|
N
|
A:CYS31
|
4.6
|
20.3
|
1.0
|
CG
|
A:LEU36
|
4.6
|
11.0
|
1.0
|
CA
|
A:LEU25
|
4.8
|
20.2
|
1.0
|
CB
|
A:LEU36
|
4.8
|
16.8
|
1.0
|
CD2
|
A:LEU21
|
4.9
|
10.6
|
1.0
|
N
|
A:LEU25
|
4.9
|
10.3
|
1.0
|
N
|
A:VAL22
|
4.9
|
10.7
|
1.0
|
CG
|
A:LEU21
|
5.0
|
6.7
|
1.0
|
|
Mercury binding site 9 out
of 10 in 1qz4
Go back to
Mercury Binding Sites List in 1qz4
Mercury binding site 9 out
of 10 in the Structure of Ycfc Protein of Unknown Function Escherichia Coli
Mono view
Stereo pair view
|
A full contact list of Mercury with other atoms in the Hg binding
site number 9 of Structure of Ycfc Protein of Unknown Function Escherichia Coli within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Hg309
b:36.2
occ:0.16
|
ND1
|
A:HIS122
|
2.6
|
33.3
|
1.0
|
O
|
A:ARG118
|
2.8
|
22.5
|
1.0
|
CE1
|
A:HIS122
|
3.5
|
33.8
|
1.0
|
CG
|
A:HIS122
|
3.5
|
32.9
|
1.0
|
CB
|
A:HIS122
|
3.8
|
22.4
|
1.0
|
C
|
A:ARG118
|
3.9
|
17.8
|
1.0
|
CA
|
A:GLN119
|
3.9
|
14.9
|
1.0
|
O
|
A:GLN119
|
4.2
|
12.8
|
1.0
|
CE2
|
A:PHE123
|
4.3
|
18.1
|
1.0
|
N
|
A:GLN119
|
4.3
|
15.0
|
1.0
|
CD2
|
A:PHE123
|
4.4
|
12.6
|
1.0
|
C
|
A:GLN119
|
4.4
|
12.2
|
1.0
|
N
|
A:HIS122
|
4.5
|
16.0
|
1.0
|
NE2
|
A:HIS122
|
4.6
|
38.7
|
1.0
|
CD2
|
A:HIS122
|
4.7
|
31.8
|
1.0
|
CA
|
A:HIS122
|
4.8
|
16.9
|
1.0
|
CB
|
A:GLU121
|
4.9
|
13.9
|
1.0
|
|
Mercury binding site 10 out
of 10 in 1qz4
Go back to
Mercury Binding Sites List in 1qz4
Mercury binding site 10 out
of 10 in the Structure of Ycfc Protein of Unknown Function Escherichia Coli
Mono view
Stereo pair view
|
A full contact list of Mercury with other atoms in the Hg binding
site number 10 of Structure of Ycfc Protein of Unknown Function Escherichia Coli within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Hg310
b:33.3
occ:0.15
|
CD1
|
A:LEU172
|
3.1
|
19.6
|
1.0
|
O
|
A:LEU172
|
3.4
|
8.9
|
1.0
|
CB
|
A:ARG176
|
3.5
|
15.3
|
1.0
|
N
|
A:ARG176
|
3.7
|
9.6
|
1.0
|
CA
|
A:ARG176
|
3.7
|
12.8
|
1.0
|
CD2
|
A:LEU109
|
3.7
|
16.0
|
1.0
|
CD1
|
A:ILE113
|
3.8
|
8.9
|
1.0
|
CG
|
A:LEU172
|
4.0
|
14.7
|
1.0
|
CG2
|
A:ILE175
|
4.1
|
13.5
|
1.0
|
CG
|
A:ARG176
|
4.1
|
16.3
|
1.0
|
O
|
A:HOH355
|
4.3
|
28.1
|
1.0
|
C
|
A:ILE175
|
4.3
|
11.6
|
1.0
|
CB
|
A:ILE175
|
4.3
|
9.5
|
1.0
|
C
|
A:LEU172
|
4.4
|
8.8
|
1.0
|
CG
|
A:LEU109
|
4.4
|
13.6
|
1.0
|
CD1
|
A:LEU109
|
4.4
|
13.0
|
1.0
|
CD1
|
A:ILE142
|
4.6
|
21.1
|
1.0
|
O
|
A:ILE175
|
4.9
|
4.8
|
1.0
|
CA
|
A:LEU172
|
4.9
|
7.7
|
1.0
|
CA
|
A:ILE175
|
4.9
|
10.1
|
1.0
|
CB
|
A:LEU172
|
5.0
|
11.8
|
1.0
|
CG1
|
A:ILE113
|
5.0
|
11.9
|
1.0
|
|
Reference:
Z.Otwinowski,
D.M.Borek,
Y.Chen,
T.Skarina,
A.Savchenko,
A.Edwards.
Structure of A Hypothetical Protein Ycfc Coded By Escherichia Coli Genome. To Be Published.
Page generated: Sun Aug 11 01:15:25 2024
|