Atomistry » Mercury » PDB 1of5-1rsr » 1r81
Atomistry »
  Mercury »
    PDB 1of5-1rsr »
      1r81 »

Mercury in PDB 1r81: Glycosyltransferase A in Complex with 3-Amino-Acceptor Analog Inhibitor and Uridine Diphosphate-N-Acetyl-Galactose

Enzymatic activity of Glycosyltransferase A in Complex with 3-Amino-Acceptor Analog Inhibitor and Uridine Diphosphate-N-Acetyl-Galactose

All present enzymatic activity of Glycosyltransferase A in Complex with 3-Amino-Acceptor Analog Inhibitor and Uridine Diphosphate-N-Acetyl-Galactose:
2.4.1.40;

Protein crystallography data

The structure of Glycosyltransferase A in Complex with 3-Amino-Acceptor Analog Inhibitor and Uridine Diphosphate-N-Acetyl-Galactose, PDB code: 1r81 was solved by H.P.Nguyen, N.O.L.Seto, Y.Cai, E.K.Leinala, S.N.Borisova, M.M.Palcic, S.V.Evans, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.61 / 1.75
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 52.600, 149.400, 79.700, 90.00, 90.00, 90.00
R / Rfree (%) 21.4 / 22.7

Mercury Binding Sites:

The binding sites of Mercury atom in the Glycosyltransferase A in Complex with 3-Amino-Acceptor Analog Inhibitor and Uridine Diphosphate-N-Acetyl-Galactose (pdb code 1r81). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 4 binding sites of Mercury where determined in the Glycosyltransferase A in Complex with 3-Amino-Acceptor Analog Inhibitor and Uridine Diphosphate-N-Acetyl-Galactose, PDB code: 1r81:
Jump to Mercury binding site number: 1; 2; 3; 4;

Mercury binding site 1 out of 4 in 1r81

Go back to Mercury Binding Sites List in 1r81
Mercury binding site 1 out of 4 in the Glycosyltransferase A in Complex with 3-Amino-Acceptor Analog Inhibitor and Uridine Diphosphate-N-Acetyl-Galactose


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Glycosyltransferase A in Complex with 3-Amino-Acceptor Analog Inhibitor and Uridine Diphosphate-N-Acetyl-Galactose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg401

b:50.9
occ:0.50
SG A:CYS284 2.6 33.5 1.0
SD A:MET288 2.7 41.5 1.0
OD1 A:ASP302 3.0 41.6 1.0
CB A:CYS284 3.5 29.9 1.0
C A:CYS284 3.7 28.6 1.0
N A:HIS285 3.7 28.7 1.0
CG A:MET288 3.8 34.7 1.0
O A:CYS284 3.8 27.6 1.0
CA A:HIS285 4.0 31.0 1.0
CA A:CYS284 4.2 27.2 1.0
CG A:ASP302 4.2 38.3 1.0
CE A:MET288 4.2 40.5 1.0
HG A:HG402 4.4 45.5 0.5
CB A:MET288 4.7 31.3 1.0
CB A:HIS285 4.8 34.0 1.0
O A:THR281 4.8 23.4 1.0
CB A:ASP302 4.8 34.6 1.0

Mercury binding site 2 out of 4 in 1r81

Go back to Mercury Binding Sites List in 1r81
Mercury binding site 2 out of 4 in the Glycosyltransferase A in Complex with 3-Amino-Acceptor Analog Inhibitor and Uridine Diphosphate-N-Acetyl-Galactose


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of Glycosyltransferase A in Complex with 3-Amino-Acceptor Analog Inhibitor and Uridine Diphosphate-N-Acetyl-Galactose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg402

b:45.5
occ:0.50
SG A:CYS284 2.7 33.5 1.0
CB A:CYS284 3.0 29.9 1.0
CD2 A:LEU280 3.6 21.8 1.0
O A:ASP302 3.8 26.9 1.0
CB A:LEU306 4.1 19.9 1.0
N A:LEU306 4.1 19.7 1.0
CA A:LEU306 4.2 19.9 1.0
HG A:HG401 4.4 50.9 0.5
CA A:CYS284 4.5 27.2 1.0
C A:ASP302 4.6 27.7 1.0
CD1 A:LEU306 4.6 21.1 1.0
O A:LEU280 4.7 21.1 1.0
C A:HIS305 4.8 21.7 1.0
CB A:HIS305 4.8 24.9 1.0
CB A:ASP302 4.8 34.6 1.0
CG A:LEU280 4.9 18.8 1.0
CA A:ASP302 4.9 30.6 1.0

Mercury binding site 3 out of 4 in 1r81

Go back to Mercury Binding Sites List in 1r81
Mercury binding site 3 out of 4 in the Glycosyltransferase A in Complex with 3-Amino-Acceptor Analog Inhibitor and Uridine Diphosphate-N-Acetyl-Galactose


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 3 of Glycosyltransferase A in Complex with 3-Amino-Acceptor Analog Inhibitor and Uridine Diphosphate-N-Acetyl-Galactose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg403

b:34.6
occ:1.00
SG A:CYS209 2.3 24.2 1.0
OG1 A:THR119 3.0 23.4 1.0
CB A:CYS209 3.3 21.7 1.0
O A:HOH517 3.8 34.2 1.0
CB A:THR119 4.0 19.1 1.0
CG2 A:THR119 4.0 21.5 1.0
CG1 A:VAL277 4.2 17.3 1.0
CA A:CYS209 4.2 18.5 1.0
CD1 A:LEU207 4.6 22.6 1.0
N A:CYS209 4.7 18.0 1.0
CB A:LEU207 4.9 20.9 1.0
CZ A:PHE270 4.9 20.2 1.0

Mercury binding site 4 out of 4 in 1r81

Go back to Mercury Binding Sites List in 1r81
Mercury binding site 4 out of 4 in the Glycosyltransferase A in Complex with 3-Amino-Acceptor Analog Inhibitor and Uridine Diphosphate-N-Acetyl-Galactose


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 4 of Glycosyltransferase A in Complex with 3-Amino-Acceptor Analog Inhibitor and Uridine Diphosphate-N-Acetyl-Galactose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg404

b:46.3
occ:1.00
SG A:CYS80 2.5 46.2 1.0
CB A:CYS80 2.8 40.9 1.0
O A:GLY98 2.8 27.2 1.0
CA A:CYS80 3.1 40.0 1.0
O A:HOH549 3.8 50.0 1.0
C A:GLY98 4.0 24.5 1.0
N A:CYS80 4.1 39.2 1.0
O A:HOH578 4.1 34.3 1.0
C A:CYS80 4.2 38.5 1.0
CA A:THR99 4.3 21.3 1.0
O A:CYS80 4.5 39.5 1.0
N A:THR99 4.6 20.8 1.0
C A:THR99 4.8 21.3 1.0
O A:THR99 4.8 23.0 1.0
C A:PRO79 4.9 39.2 1.0

Reference:

H.P.Nguyen, N.O.L.Seto, Y.Cai, E.K.Leinala, S.N.Borisova, M.M.Palcic, S.V.Evans. The Influence of An Intramolecular Hydrogen Bond in Differential Recognition of Inhibitory Acceptor Analogs By Human Abo(H) Blood Group A and B Glycosyltransferases J.Biol.Chem. V. 278 49191 2003.
ISSN: ISSN 0021-9258
PubMed: 12972418
DOI: 10.1074/JBC.M308770200
Page generated: Sun Aug 11 01:24:11 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy