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Mercury in PDB 1vcp: Semliki Forest Virus Capsid Protein (Crystal Form I)

Protein crystallography data

The structure of Semliki Forest Virus Capsid Protein (Crystal Form I), PDB code: 1vcp was solved by G.Lu, H.-K.Choi, M.G.Rossmann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 6.00 / 3.00
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 39.140, 176.220, 40.210, 90.00, 110.36, 90.00
R / Rfree (%) 15.7 / n/a

Mercury Binding Sites:

The binding sites of Mercury atom in the Semliki Forest Virus Capsid Protein (Crystal Form I) (pdb code 1vcp). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 3 binding sites of Mercury where determined in the Semliki Forest Virus Capsid Protein (Crystal Form I), PDB code: 1vcp:
Jump to Mercury binding site number: 1; 2; 3;

Mercury binding site 1 out of 3 in 1vcp

Go back to Mercury Binding Sites List in 1vcp
Mercury binding site 1 out of 3 in the Semliki Forest Virus Capsid Protein (Crystal Form I)


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Semliki Forest Virus Capsid Protein (Crystal Form I) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg272

b:33.9
occ:1.00
SG A:CYS119 2.5 21.8 1.0
SG A:CYS134 2.6 22.1 1.0
CB A:CYS119 3.3 22.8 1.0
CB A:CYS134 3.4 20.7 1.0
O A:CYS119 3.6 20.5 1.0
N A:LEU135 3.7 12.4 1.0
C A:CYS119 3.8 18.6 1.0
CB A:SER182 3.8 18.1 1.0
O A:LEU135 3.9 18.0 1.0
CA A:CYS134 4.0 15.5 1.0
CA A:CYS119 4.1 20.3 1.0
C A:CYS134 4.2 14.7 1.0
C A:LEU135 4.2 14.8 1.0
CG2 A:VAL230 4.3 2.0 1.0
CG1 A:ILE120 4.3 9.4 1.0
N A:ILE120 4.4 15.2 1.0
CG A:PRO222 4.4 2.0 1.0
OG A:SER182 4.4 20.0 1.0
CA A:LEU135 4.5 13.4 1.0
CZ A:PHE224 4.5 14.1 1.0
CB A:PRO222 4.7 2.0 1.0
CE1 A:PHE224 4.7 14.3 1.0
N A:VAL136 4.8 18.3 1.0
CD1 A:ILE120 4.8 5.8 1.0
CA A:ILE120 4.8 9.3 1.0
CD A:PRO222 4.9 3.8 1.0

Mercury binding site 2 out of 3 in 1vcp

Go back to Mercury Binding Sites List in 1vcp
Mercury binding site 2 out of 3 in the Semliki Forest Virus Capsid Protein (Crystal Form I)


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of Semliki Forest Virus Capsid Protein (Crystal Form I) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg271

b:25.6
occ:1.00
SG B:CYS134 2.4 13.7 1.0
SG B:CYS119 2.5 24.5 1.0
CB B:CYS134 3.2 15.7 1.0
CB B:CYS119 3.4 23.6 1.0
O B:CYS119 3.5 17.5 1.0
N B:LEU135 3.5 4.7 1.0
O B:LEU135 3.6 14.1 1.0
CA B:CYS134 3.7 11.1 1.0
C B:CYS119 3.8 16.4 1.0
C B:CYS134 3.9 8.6 1.0
C B:LEU135 4.0 10.8 1.0
CB B:SER182 4.0 20.0 1.0
CA B:CYS119 4.1 18.9 1.0
CG2 B:VAL136 4.2 2.0 1.0
CG B:PRO222 4.3 2.0 1.0
CA B:LEU135 4.4 8.0 1.0
CG1 B:ILE120 4.4 11.5 1.0
CG2 B:VAL230 4.4 2.0 1.0
N B:ILE120 4.5 13.5 1.0
CB B:PRO222 4.6 2.0 1.0
CZ B:PHE224 4.7 12.1 1.0
CE1 B:PHE224 4.7 10.6 1.0
N B:VAL136 4.7 8.0 1.0
OG B:SER182 4.8 24.5 1.0
O B:CYS134 4.8 10.9 1.0
CD1 B:ILE120 4.8 7.3 1.0
CA B:ILE120 5.0 12.7 1.0

Mercury binding site 3 out of 3 in 1vcp

Go back to Mercury Binding Sites List in 1vcp
Mercury binding site 3 out of 3 in the Semliki Forest Virus Capsid Protein (Crystal Form I)


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 3 of Semliki Forest Virus Capsid Protein (Crystal Form I) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Hg273

b:35.2
occ:1.00
SG C:CYS119 2.5 27.4 1.0
O C:CYS119 2.6 19.1 1.0
SG C:CYS134 2.6 22.1 1.0
C C:CYS119 3.2 18.4 1.0
CB C:CYS119 3.3 24.0 1.0
CB C:CYS134 3.3 18.7 1.0
N C:LEU135 3.5 10.7 1.0
CA C:CYS134 3.7 16.0 1.0
CA C:CYS119 3.8 20.2 1.0
CG1 C:ILE120 3.9 9.9 1.0
O C:LEU135 4.0 19.7 1.0
C C:CYS134 4.0 15.0 1.0
N C:ILE120 4.0 15.4 1.0
CB C:SER182 4.2 20.9 1.0
CG C:PRO222 4.2 2.0 1.0
C C:LEU135 4.3 14.7 1.0
CA C:ILE120 4.4 9.6 1.0
CA C:LEU135 4.5 10.7 1.0
CD1 C:ILE120 4.5 10.0 1.0
CB C:PRO222 4.6 2.7 1.0
CZ C:PHE224 4.7 15.7 1.0
CG2 C:VAL230 4.7 7.0 1.0
OG C:SER182 4.8 18.2 1.0
CB C:ILE120 4.8 5.7 1.0
CD C:PRO222 4.9 2.0 1.0
N C:VAL136 4.9 14.2 1.0
CE1 C:PHE224 4.9 13.4 1.0

Reference:

H.K.Choi, G.Lu, S.Lee, G.Wengler, M.G.Rossmann. Structure of Semliki Forest Virus Core Protein. Proteins V. 27 345 1997.
ISSN: ISSN 0887-3585
PubMed: 9094737
DOI: 10.1002/(SICI)1097-0134(199703)27:3<345::AID-PROT3>3.0.CO;2-C
Page generated: Sun Dec 13 19:05:26 2020

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