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Mercury in PDB 1vgl: Crystal Structure of Tetrameric Kaib From T.Elongatus Bp-1

Protein crystallography data

The structure of Crystal Structure of Tetrameric Kaib From T.Elongatus Bp-1, PDB code: 1vgl was solved by R.Iwase, K.Imada, F.Hayashi, T.Uzumaki, K.Namba, M.Ishiura, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.60
Space group P 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 63.740, 33.410, 93.740, 90.00, 100.12, 90.00
R / Rfree (%) 22.7 / 28.9

Mercury Binding Sites:

The binding sites of Mercury atom in the Crystal Structure of Tetrameric Kaib From T.Elongatus Bp-1 (pdb code 1vgl). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 2 binding sites of Mercury where determined in the Crystal Structure of Tetrameric Kaib From T.Elongatus Bp-1, PDB code: 1vgl:
Jump to Mercury binding site number: 1; 2;

Mercury binding site 1 out of 2 in 1vgl

Go back to Mercury Binding Sites List in 1vgl
Mercury binding site 1 out of 2 in the Crystal Structure of Tetrameric Kaib From T.Elongatus Bp-1


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Crystal Structure of Tetrameric Kaib From T.Elongatus Bp-1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg1001

b:84.3
occ:1.00
SG A:CYS64 2.6 32.4 1.0
O A:CYS64 3.4 25.8 1.0
CB A:CYS64 3.6 33.7 1.0
CA A:CYS64 3.7 29.3 1.0
C A:CYS64 3.7 25.5 1.0
O A:HOH1006 4.1 80.5 1.0
CD A:LYS67 4.5 32.5 1.0
N A:LEU65 4.7 25.2 1.0
CB A:LYS67 4.9 36.6 1.0

Mercury binding site 2 out of 2 in 1vgl

Go back to Mercury Binding Sites List in 1vgl
Mercury binding site 2 out of 2 in the Crystal Structure of Tetrameric Kaib From T.Elongatus Bp-1


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of Crystal Structure of Tetrameric Kaib From T.Elongatus Bp-1 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Hg1002

b:89.4
occ:1.00
SG C:CYS64 2.5 41.5 1.0
O C:CYS64 3.0 34.7 1.0
CA C:CYS64 3.5 35.3 1.0
C C:CYS64 3.5 33.9 1.0
CB C:CYS64 3.5 39.7 1.0
O C:HOH1019 3.7 48.4 1.0
CD C:LYS67 4.0 40.4 1.0
CB C:LYS67 4.4 29.2 1.0
N C:LEU65 4.6 32.6 1.0
CG C:LYS67 4.7 35.8 1.0
N C:CYS64 4.9 35.5 1.0

Reference:

R.Iwase, K.Imada, F.Hayashi, T.Uzumaki, M.Morishita, K.Onai, Y.Furukawa, K.Namba, M.Ishiura. Functionally Important Substructures of Circadian Clock Protein Kaib in A Unique Tetramer Complex. J.Biol.Chem. V. 280 43141 2005.
ISSN: ISSN 0021-9258
PubMed: 16227211
DOI: 10.1074/JBC.M503360200
Page generated: Wed Oct 28 18:40:47 2020

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