Atomistry » Mercury » PDB 1rsv-1yp2 » 1vgl
Atomistry »
  Mercury »
    PDB 1rsv-1yp2 »
      1vgl »

Mercury in PDB 1vgl: Crystal Structure of Tetrameric Kaib From T.Elongatus Bp-1

Protein crystallography data

The structure of Crystal Structure of Tetrameric Kaib From T.Elongatus Bp-1, PDB code: 1vgl was solved by R.Iwase, K.Imada, F.Hayashi, T.Uzumaki, K.Namba, M.Ishiura, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.60
Space group P 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 63.740, 33.410, 93.740, 90.00, 100.12, 90.00
R / Rfree (%) 22.7 / 28.9

Mercury Binding Sites:

The binding sites of Mercury atom in the Crystal Structure of Tetrameric Kaib From T.Elongatus Bp-1 (pdb code 1vgl). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 2 binding sites of Mercury where determined in the Crystal Structure of Tetrameric Kaib From T.Elongatus Bp-1, PDB code: 1vgl:
Jump to Mercury binding site number: 1; 2;

Mercury binding site 1 out of 2 in 1vgl

Go back to Mercury Binding Sites List in 1vgl
Mercury binding site 1 out of 2 in the Crystal Structure of Tetrameric Kaib From T.Elongatus Bp-1


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Crystal Structure of Tetrameric Kaib From T.Elongatus Bp-1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg1001

b:84.3
occ:1.00
SG A:CYS64 2.6 32.4 1.0
O A:CYS64 3.4 25.8 1.0
CB A:CYS64 3.6 33.7 1.0
CA A:CYS64 3.7 29.3 1.0
C A:CYS64 3.7 25.5 1.0
O A:HOH1006 4.1 80.5 1.0
CD A:LYS67 4.5 32.5 1.0
N A:LEU65 4.7 25.2 1.0
CB A:LYS67 4.9 36.6 1.0

Mercury binding site 2 out of 2 in 1vgl

Go back to Mercury Binding Sites List in 1vgl
Mercury binding site 2 out of 2 in the Crystal Structure of Tetrameric Kaib From T.Elongatus Bp-1


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of Crystal Structure of Tetrameric Kaib From T.Elongatus Bp-1 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Hg1002

b:89.4
occ:1.00
SG C:CYS64 2.5 41.5 1.0
O C:CYS64 3.0 34.7 1.0
CA C:CYS64 3.5 35.3 1.0
C C:CYS64 3.5 33.9 1.0
CB C:CYS64 3.5 39.7 1.0
O C:HOH1019 3.7 48.4 1.0
CD C:LYS67 4.0 40.4 1.0
CB C:LYS67 4.4 29.2 1.0
N C:LEU65 4.6 32.6 1.0
CG C:LYS67 4.7 35.8 1.0
N C:CYS64 4.9 35.5 1.0

Reference:

R.Iwase, K.Imada, F.Hayashi, T.Uzumaki, M.Morishita, K.Onai, Y.Furukawa, K.Namba, M.Ishiura. Functionally Important Substructures of Circadian Clock Protein Kaib in A Unique Tetramer Complex. J.Biol.Chem. V. 280 43141 2005.
ISSN: ISSN 0021-9258
PubMed: 16227211
DOI: 10.1074/JBC.M503360200
Page generated: Sun Aug 11 01:42:39 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy