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Mercury in PDB 1wsp: Crystal Structure of Axin Dix Domain

Protein crystallography data

The structure of Crystal Structure of Axin Dix Domain, PDB code: 1wsp was solved by N.Shibata, T.Hanamura, R.Yamamoto, Y.Ueda, H.Yamamoto, A.Kikuchi, Y.Higuchi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.17 / 2.90
Space group P 61
Cell size a, b, c (Å), α, β, γ (°) 92.130, 92.130, 85.540, 90.00, 90.00, 120.00
R / Rfree (%) 24.6 / 31.1

Mercury Binding Sites:

The binding sites of Mercury atom in the Crystal Structure of Axin Dix Domain (pdb code 1wsp). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 9 binding sites of Mercury where determined in the Crystal Structure of Axin Dix Domain, PDB code: 1wsp:
Jump to Mercury binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Mercury binding site 1 out of 9 in 1wsp

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Mercury binding site 1 out of 9 in the Crystal Structure of Axin Dix Domain


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Crystal Structure of Axin Dix Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg1094

b:0.4
occ:0.68
O A:HOH184 2.9 73.6 1.0
SG A:CYS750 2.9 89.1 1.0
OG A:SER752 3.4 52.2 1.0
O A:SER752 3.9 66.1 1.0
CB A:CYS750 3.9 82.3 1.0
CA A:CYS750 4.3 78.8 1.0
CB A:SER752 4.5 49.1 1.0
C A:SER752 4.6 61.8 1.0
N A:SER752 4.8 67.6 1.0
CA A:SER752 4.9 64.8 1.0
NH1 A:ARG773 4.9 0.8 1.0
C A:CYS750 4.9 78.0 1.0
N A:ASP751 5.0 71.5 1.0
NH2 A:ARG773 5.0 98.8 1.0

Mercury binding site 2 out of 9 in 1wsp

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Mercury binding site 2 out of 9 in the Crystal Structure of Axin Dix Domain


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of Crystal Structure of Axin Dix Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg1095

b:64.2
occ:1.00
C4 A:BEZ501 2.2 81.1 1.0
SG A:CYS760 2.3 51.6 1.0
C5 A:BEZ501 2.6 69.2 1.0
CB A:CYS760 2.8 23.3 1.0
CE1 A:PHE759 3.3 24.9 1.0
C3 A:BEZ501 3.4 77.0 1.0
CZ A:PHE759 3.8 26.7 1.0
OH A:TYR790 4.0 75.6 1.0
C6 A:BEZ501 4.0 76.8 1.0
CE1 A:TYR790 4.0 33.9 1.0
CD1 A:PHE759 4.1 20.8 1.0
CA A:CYS760 4.3 34.0 1.0
CB A:LYS830 4.3 35.4 1.0
O A:HOH105 4.5 53.6 1.0
CZ A:TYR790 4.5 45.0 1.0
CD A:LYS830 4.5 35.2 1.0
C2 A:BEZ501 4.6 71.0 1.0
CE2 A:PHE759 4.8 31.6 1.0
C1 A:BEZ501 4.8 81.7 1.0
N A:CYS760 4.8 39.6 1.0
CG A:LYS830 4.9 51.4 1.0

Mercury binding site 3 out of 9 in 1wsp

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Mercury binding site 3 out of 9 in the Crystal Structure of Axin Dix Domain


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 3 of Crystal Structure of Axin Dix Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg1096

b:91.3
occ:0.45
SG A:CYS803 2.5 0.6 1.0
CB A:CYS803 3.4 87.9 1.0
N A:CYS803 3.6 74.5 1.0
CB A:ASP802 3.8 68.2 1.0
CA A:CYS803 4.0 67.0 1.0
C A:ASP802 4.0 74.6 1.0
CA A:ASP802 4.5 69.5 1.0
O A:ASP802 4.6 85.9 1.0
O A:HOH197 4.6 53.6 1.0
OD2 A:ASP802 4.9 80.1 1.0
CG A:ASP802 4.9 81.1 1.0

Mercury binding site 4 out of 9 in 1wsp

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Mercury binding site 4 out of 9 in the Crystal Structure of Axin Dix Domain


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 4 of Crystal Structure of Axin Dix Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg1194

b:82.0
occ:0.64
SG B:CYS750 3.0 98.9 1.0
O B:SER752 3.1 52.3 1.0
O B:HOH53 3.6 64.1 1.0
CB B:CYS750 4.0 90.7 1.0
N B:ASP751 4.0 71.7 1.0
CA B:CYS750 4.1 84.7 1.0
N B:SER752 4.2 50.6 1.0
OG B:SER752 4.2 55.9 1.0
C B:SER752 4.2 52.7 1.0
OD2 B:ASP751 4.3 65.0 1.0
C B:CYS750 4.5 77.8 1.0
CA B:SER752 4.7 52.2 1.0

Mercury binding site 5 out of 9 in 1wsp

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Mercury binding site 5 out of 9 in the Crystal Structure of Axin Dix Domain


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 5 of Crystal Structure of Axin Dix Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg1195

b:82.7
occ:0.80
SG B:CYS760 2.6 54.5 1.0
CE1 B:PHE759 3.4 12.5 1.0
OH B:TYR790 3.4 37.8 1.0
CB B:CYS760 3.6 52.0 1.0
CZ B:PHE759 3.7 26.4 1.0
CE2 B:TYR790 3.9 25.7 1.0
O B:HOH60 4.0 37.1 1.0
CZ B:TYR790 4.1 44.9 1.0
CD1 B:PHE759 4.2 24.3 1.0
CB B:LYS830 4.2 63.0 1.0
O B:HOH63 4.3 48.2 1.0
CE2 B:PHE759 4.7 35.0 1.0
CG B:LYS830 4.9 50.0 1.0
CA B:CYS760 5.0 54.8 1.0

Mercury binding site 6 out of 9 in 1wsp

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Mercury binding site 6 out of 9 in the Crystal Structure of Axin Dix Domain


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 6 of Crystal Structure of Axin Dix Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg1196

b:87.5
occ:0.63
SG B:CYS803 4.2 84.4 1.0
O B:HOH64 4.5 38.3 1.0

Mercury binding site 7 out of 9 in 1wsp

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Mercury binding site 7 out of 9 in the Crystal Structure of Axin Dix Domain


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 7 of Crystal Structure of Axin Dix Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Hg295

b:71.8
occ:0.80
SG C:CYS760 2.4 48.0 1.0
OH C:TYR790 3.3 44.6 1.0
CZ C:PHE759 3.4 17.4 1.0
CB C:CYS760 3.5 39.8 1.0
CE1 C:PHE759 3.6 30.4 1.0
O C:HOH24 3.8 39.5 1.0
CE2 C:TYR790 3.9 20.7 1.0
CZ C:TYR790 4.0 51.0 1.0
CE2 C:PHE759 4.2 30.0 1.0
CB C:LYS830 4.2 52.6 1.0
CD1 C:PHE759 4.4 43.1 1.0
O C:HOH66 4.4 56.8 1.0
CG C:LYS830 4.6 52.8 1.0
O C:HOH146 4.6 67.1 1.0
CA C:CYS760 4.9 37.3 1.0
CD2 C:PHE759 4.9 44.2 1.0

Mercury binding site 8 out of 9 in 1wsp

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Mercury binding site 8 out of 9 in the Crystal Structure of Axin Dix Domain


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 8 of Crystal Structure of Axin Dix Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Hg296

b:84.7
occ:0.62
SG C:CYS750 2.7 90.8 1.0
O C:SER752 3.5 55.1 1.0
O C:HOH43 3.6 40.1 1.0
O C:CYS750 3.7 87.1 1.0
C C:CYS750 3.8 91.9 1.0
CA C:CYS750 3.9 95.5 1.0
CB C:CYS750 3.9 89.6 1.0
N C:SER752 4.1 65.2 1.0
C C:SER752 4.3 60.4 1.0
N C:ASP751 4.5 84.2 1.0
CA C:SER752 4.6 54.4 1.0
CB C:SER752 4.7 50.6 1.0

Mercury binding site 9 out of 9 in 1wsp

Go back to Mercury Binding Sites List in 1wsp
Mercury binding site 9 out of 9 in the Crystal Structure of Axin Dix Domain


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 9 of Crystal Structure of Axin Dix Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Hg297

b:74.1
occ:0.58
O C:HOH186 3.9 63.8 1.0
O C:HOH111 3.9 48.5 1.0

Reference:

N.Shibata, T.Hanamura, R.Yamamoto, Y.Ueda, H.Yamamoto, A.Kikuchi, Y.Higuchi. Crystal Structure of Axin Dix Domain To Be Published.
Page generated: Wed Oct 28 18:40:50 2020

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