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Mercury in PDB 1yc9: The Crystal Structure of the Outer Membrane Protein Vcec From the Bacterial Pathogen Vibrio Cholerae at 1.8 Resolution

Protein crystallography data

The structure of The Crystal Structure of the Outer Membrane Protein Vcec From the Bacterial Pathogen Vibrio Cholerae at 1.8 Resolution, PDB code: 1yc9 was solved by L.Federici, D.Du, F.Walas, H.Matsumura, J.Fernandez-Recio, K.S.Mckeegan, M.I.Borges-Walmsley, B.F.Luisi, A.R.Walmsley, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 63.60 / 1.80
Space group P 3 2 1
Cell size a, b, c (Å), α, β, γ (°) 71.458, 71.458, 190.702, 90.00, 90.00, 120.00
R / Rfree (%) 18.9 / 22.1

Mercury Binding Sites:

The binding sites of Mercury atom in the The Crystal Structure of the Outer Membrane Protein Vcec From the Bacterial Pathogen Vibrio Cholerae at 1.8 Resolution (pdb code 1yc9). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 2 binding sites of Mercury where determined in the The Crystal Structure of the Outer Membrane Protein Vcec From the Bacterial Pathogen Vibrio Cholerae at 1.8 Resolution, PDB code: 1yc9:
Jump to Mercury binding site number: 1; 2;

Mercury binding site 1 out of 2 in 1yc9

Go back to Mercury Binding Sites List in 1yc9
Mercury binding site 1 out of 2 in the The Crystal Structure of the Outer Membrane Protein Vcec From the Bacterial Pathogen Vibrio Cholerae at 1.8 Resolution


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of The Crystal Structure of the Outer Membrane Protein Vcec From the Bacterial Pathogen Vibrio Cholerae at 1.8 Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg1

b:43.0
occ:0.50
CE A:MET95 2.0 29.2 0.5
SG A:CYS92 2.4 38.0 1.0
HG A:HG2 2.9 34.1 0.2
CB A:CYS92 3.3 29.2 1.0
SD A:MET95 3.7 30.2 0.5
CA A:CYS92 3.8 28.6 1.0
CD2 A:HIS87 4.1 45.9 1.0
O A:HOH1241 4.3 40.5 1.0
N A:CYS92 4.5 28.3 1.0
NE2 A:HIS87 4.5 48.6 1.0
CG A:MET95 4.8 26.3 0.5
CD2 A:LEU91 4.8 35.9 1.0

Mercury binding site 2 out of 2 in 1yc9

Go back to Mercury Binding Sites List in 1yc9
Mercury binding site 2 out of 2 in the The Crystal Structure of the Outer Membrane Protein Vcec From the Bacterial Pathogen Vibrio Cholerae at 1.8 Resolution


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of The Crystal Structure of the Outer Membrane Protein Vcec From the Bacterial Pathogen Vibrio Cholerae at 1.8 Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg2

b:34.1
occ:0.20
HG A:HG1 2.9 43.0 0.5
CE A:MET95 3.0 29.2 0.5
O A:CYS92 3.0 26.7 1.0
CB A:CYS92 3.1 29.2 1.0
CA A:CYS92 3.2 28.6 1.0
C A:CYS92 3.5 26.4 1.0
CB A:MET95 3.7 25.5 0.5
SG A:CYS92 3.7 38.0 1.0
CB A:MET95 4.1 26.6 0.5
SD A:MET95 4.2 30.2 0.5
CG A:MET95 4.3 26.3 0.5
N A:ALA96 4.5 22.8 1.0
N A:CYS92 4.5 28.3 1.0
O A:HOH1241 4.6 40.5 1.0
N A:MET93 4.8 24.1 1.0
CB A:ALA96 4.9 22.2 1.0
CA A:MET95 4.9 24.5 0.5
C A:MET95 4.9 24.4 1.0
CA A:MET95 5.0 25.1 0.5

Reference:

L.Federici, D.Du, F.Walas, H.Matsumura, J.Fernandez-Recio, K.S.Mckeegan, M.I.Borges-Walmsley, B.F.Luisi, A.R.Walmsley. The Crystal Structure of the Outer Membrane Protein Vcec From the Bacterial Pathogen Vibrio Cholerae at 1.8 A Resolution J.Biol.Chem. V. 280 15307 2005.
ISSN: ISSN 0021-9258
PubMed: 15684414
DOI: 10.1074/JBC.M500401200
Page generated: Wed Oct 28 18:40:56 2020

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