Atomistry » Mercury » PDB 1yu1-2epm » 2a8u
Atomistry »
  Mercury »
    PDB 1yu1-2epm »
      2a8u »

Mercury in PDB 2a8u: Crystal Structure of Human Galactosyltransferase (Gtb) Complexed with Beta-Methyl Lactoside

Protein crystallography data

The structure of Crystal Structure of Human Galactosyltransferase (Gtb) Complexed with Beta-Methyl Lactoside, PDB code: 2a8u was solved by J.A.Letts, N.L.Rose, Y.R.Fang, C.H.Barry, S.N.Borisova, N.O.Seto, M.M.Palcic, S.V.Evans, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.69
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 52.480, 150.690, 79.250, 90.00, 90.00, 90.00
R / Rfree (%) 20.8 / 23.2

Other elements in 2a8u:

The structure of Crystal Structure of Human Galactosyltransferase (Gtb) Complexed with Beta-Methyl Lactoside also contains other interesting chemical elements:

Manganese (Mn) 1 atom
Chlorine (Cl) 1 atom

Mercury Binding Sites:

The binding sites of Mercury atom in the Crystal Structure of Human Galactosyltransferase (Gtb) Complexed with Beta-Methyl Lactoside (pdb code 2a8u). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 5 binding sites of Mercury where determined in the Crystal Structure of Human Galactosyltransferase (Gtb) Complexed with Beta-Methyl Lactoside, PDB code: 2a8u:
Jump to Mercury binding site number: 1; 2; 3; 4; 5;

Mercury binding site 1 out of 5 in 2a8u

Go back to Mercury Binding Sites List in 2a8u
Mercury binding site 1 out of 5 in the Crystal Structure of Human Galactosyltransferase (Gtb) Complexed with Beta-Methyl Lactoside


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Crystal Structure of Human Galactosyltransferase (Gtb) Complexed with Beta-Methyl Lactoside within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg401

b:32.5
occ:0.40
SG A:CYS284 2.4 24.8 0.8
O A:HOH672 2.6 38.3 1.0
CB A:CYS284 3.1 22.8 0.8
CD2 A:LEU280 3.4 23.2 1.0
CA A:LEU306 3.8 20.7 1.0
N A:LEU306 3.8 21.7 1.0
O A:ASP302 3.9 28.5 1.0
CB A:LEU306 3.9 19.0 1.0
C A:HIS305 4.4 23.3 1.0
CD1 A:LEU306 4.4 20.8 1.0
CG A:LEU280 4.5 20.7 1.0
CB A:HIS305 4.5 25.8 1.0
CA A:CYS284 4.6 23.2 0.8
O A:LEU280 4.6 21.3 1.0
HG A:HG403 4.7 22.2 0.3
C A:ASP302 4.8 30.2 1.0
CG A:LEU306 4.8 21.3 1.0
O A:HIS305 4.8 22.6 1.0
O A:HOH671 4.9 30.3 1.0

Mercury binding site 2 out of 5 in 2a8u

Go back to Mercury Binding Sites List in 2a8u
Mercury binding site 2 out of 5 in the Crystal Structure of Human Galactosyltransferase (Gtb) Complexed with Beta-Methyl Lactoside


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of Crystal Structure of Human Galactosyltransferase (Gtb) Complexed with Beta-Methyl Lactoside within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg402

b:31.5
occ:0.60
SG A:CYS209 2.4 29.3 1.0
O A:HOH666 2.5 34.4 1.0
OG1 A:THR119 2.9 25.6 1.0
CB A:CYS209 3.2 21.8 1.0
HG A:HG405 3.5 33.8 0.2
CB A:THR119 3.9 23.0 1.0
CG2 A:THR119 4.1 24.2 1.0
CA A:CYS209 4.2 18.9 1.0
CG1 A:VAL277 4.4 16.3 1.0
N A:CYS209 4.7 17.2 1.0
CD1 A:LEU207 4.9 23.6 1.0
CZ A:PHE270 4.9 21.9 1.0

Mercury binding site 3 out of 5 in 2a8u

Go back to Mercury Binding Sites List in 2a8u
Mercury binding site 3 out of 5 in the Crystal Structure of Human Galactosyltransferase (Gtb) Complexed with Beta-Methyl Lactoside


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 3 of Crystal Structure of Human Galactosyltransferase (Gtb) Complexed with Beta-Methyl Lactoside within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg403

b:22.2
occ:0.30
SG A:CYS284 2.5 24.8 0.8
O A:HOH668 2.6 35.1 1.0
O A:HIS305 3.2 22.6 1.0
CA A:CYS284 3.3 23.2 0.8
N A:CYS284 3.4 22.0 0.8
CB A:CYS284 3.4 22.8 0.8
O A:HOH669 3.5 39.4 1.0
CB A:TYR309 3.6 21.2 1.0
C A:HIS305 3.8 23.3 1.0
C A:ALA283 3.9 24.0 1.0
CB A:HIS305 3.9 25.8 1.0
CD1 A:TYR309 4.0 20.7 1.0
O A:ALA283 4.2 25.5 1.0
CG A:TYR309 4.2 19.9 1.0
CB A:ALA283 4.3 22.2 1.0
CA A:HIS305 4.3 24.5 1.0
N A:TYR309 4.3 21.3 1.0
CA A:TYR309 4.3 20.6 1.0
O A:LEU280 4.5 21.3 1.0
C A:CYS284 4.7 23.7 0.8
N A:LEU306 4.7 21.7 1.0
HG A:HG401 4.7 32.5 0.4
CA A:ALA283 4.7 24.1 1.0
CB A:ALA287 4.8 29.9 1.0
CG A:HIS305 4.8 27.6 1.0
CD2 A:HIS305 5.0 28.9 1.0

Mercury binding site 4 out of 5 in 2a8u

Go back to Mercury Binding Sites List in 2a8u
Mercury binding site 4 out of 5 in the Crystal Structure of Human Galactosyltransferase (Gtb) Complexed with Beta-Methyl Lactoside


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 4 of Crystal Structure of Human Galactosyltransferase (Gtb) Complexed with Beta-Methyl Lactoside within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg404

b:34.0
occ:0.40
O A:GLY98 2.7 24.9 1.0
SG A:CYS80 2.7 49.5 1.0
CB A:CYS80 3.0 44.3 1.0
CA A:CYS80 3.0 42.1 1.0
C A:GLY98 3.8 23.0 1.0
C A:CYS80 3.8 40.7 1.0
O A:CYS80 3.9 40.8 1.0
N A:CYS80 4.2 42.2 1.0
CA A:THR99 4.3 19.4 1.0
N A:THR99 4.5 21.1 1.0
O A:HOH586 4.6 42.3 1.0
CA A:GLY98 4.8 22.0 1.0
C A:THR99 4.9 20.8 1.0
N A:ARG81 4.9 38.7 1.0

Mercury binding site 5 out of 5 in 2a8u

Go back to Mercury Binding Sites List in 2a8u
Mercury binding site 5 out of 5 in the Crystal Structure of Human Galactosyltransferase (Gtb) Complexed with Beta-Methyl Lactoside


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 5 of Crystal Structure of Human Galactosyltransferase (Gtb) Complexed with Beta-Methyl Lactoside within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg405

b:33.8
occ:0.20
OG1 A:THR119 2.8 25.6 1.0
CL A:CL406 2.9 26.4 0.7
CE1 A:PHE121 3.1 37.4 1.0
CD1 A:PHE121 3.5 37.1 1.0
HG A:HG402 3.5 31.5 0.6
CB A:CYS209 3.6 21.8 1.0
O A:THR119 3.6 23.0 1.0
CB A:THR119 3.7 23.0 1.0
C A:THR119 3.9 22.1 1.0
CA A:CYS209 4.0 18.9 1.0
O A:HOH666 4.3 34.4 1.0
CZ A:PHE121 4.4 37.5 1.0
N A:VAL120 4.4 21.6 1.0
N A:VAL210 4.4 19.0 1.0
CA A:THR119 4.5 22.5 1.0
SG A:CYS209 4.5 29.3 1.0
C A:CYS209 4.5 17.9 1.0
O A:VAL210 4.6 18.8 1.0
CA A:VAL120 4.6 21.8 1.0
O A:HOH519 4.6 25.5 1.0
CG A:PHE121 4.8 34.2 1.0
CG2 A:THR119 4.9 24.2 1.0

Reference:

J.A.Letts, N.L.Rose, Y.R.Fang, C.H.Barry, S.N.Borisova, N.O.Seto, M.M.Palcic, S.V.Evans. Differential Recognition of the Type I and II H Antigen Acceptors By the Human Abo(H) Blood Group A and B Glycosyltransferases. J.Biol.Chem. V. 281 3625 2006.
ISSN: ISSN 0021-9258
PubMed: 16326711
DOI: 10.1074/JBC.M507620200
Page generated: Sun Dec 13 19:06:17 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy