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Mercury in PDB 2ga8: Crystal Structure of YFH7 From Saccharomyces Cerevisiae: A Putative P-Loop Containing Kinase with A Circular Permutation.

Protein crystallography data

The structure of Crystal Structure of YFH7 From Saccharomyces Cerevisiae: A Putative P-Loop Containing Kinase with A Circular Permutation., PDB code: 2ga8 was solved by V.Chaptal, S.Morera, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.77
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 135.278, 135.278, 48.476, 90.00, 90.00, 120.00
R / Rfree (%) 19.4 / 21.9

Mercury Binding Sites:

The binding sites of Mercury atom in the Crystal Structure of YFH7 From Saccharomyces Cerevisiae: A Putative P-Loop Containing Kinase with A Circular Permutation. (pdb code 2ga8). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 4 binding sites of Mercury where determined in the Crystal Structure of YFH7 From Saccharomyces Cerevisiae: A Putative P-Loop Containing Kinase with A Circular Permutation., PDB code: 2ga8:
Jump to Mercury binding site number: 1; 2; 3; 4;

Mercury binding site 1 out of 4 in 2ga8

Go back to Mercury Binding Sites List in 2ga8
Mercury binding site 1 out of 4 in the Crystal Structure of YFH7 From Saccharomyces Cerevisiae: A Putative P-Loop Containing Kinase with A Circular Permutation.


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Crystal Structure of YFH7 From Saccharomyces Cerevisiae: A Putative P-Loop Containing Kinase with A Circular Permutation. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg360

b:30.3
occ:0.30
SG A:CME208 2.3 35.7 0.3
O A:LYS204 2.6 14.4 1.0
CA A:CME208 2.9 31.3 0.5
CA A:CME208 2.9 31.6 0.5
CB A:CME208 3.1 33.1 0.5
CB A:CME208 3.2 32.8 0.5
N A:CME208 3.2 27.1 0.5
N A:CME208 3.2 27.3 0.5
C A:LEU207 3.6 25.1 1.0
O A:LEU207 3.6 26.6 1.0
C A:LYS204 3.7 13.3 1.0
CG A:LYS204 4.0 18.8 1.0
CG1 A:VAL73 4.3 27.8 1.0
C A:CME208 4.4 33.2 0.5
C A:CME208 4.4 33.4 0.5
CA A:LYS204 4.5 13.1 1.0
CA A:LEU207 4.6 20.0 1.0
N A:THR205 4.7 13.1 1.0
CA A:THR205 4.8 14.8 1.0
O A:HOH690 4.8 32.9 1.0
N A:LEU207 4.8 17.0 1.0
N A:LYS209 4.8 35.0 1.0
CB A:LYS204 4.9 14.7 1.0
CG2 A:VAL73 4.9 28.1 1.0
CB A:LEU207 4.9 16.7 1.0
SG A:CME208 5.0 34.0 0.7
C A:THR205 5.0 16.8 1.0

Mercury binding site 2 out of 4 in 2ga8

Go back to Mercury Binding Sites List in 2ga8
Mercury binding site 2 out of 4 in the Crystal Structure of YFH7 From Saccharomyces Cerevisiae: A Putative P-Loop Containing Kinase with A Circular Permutation.


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of Crystal Structure of YFH7 From Saccharomyces Cerevisiae: A Putative P-Loop Containing Kinase with A Circular Permutation. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg361

b:30.9
occ:0.30
SG A:CYS255 2.5 21.9 1.0
CB A:CYS255 3.2 17.3 1.0
CE1 A:PHE238 3.6 24.5 1.0
CZ A:PHE238 3.6 24.3 1.0
O A:HOH576 3.6 41.1 1.0
O A:HOH623 3.7 39.6 1.0
OD2 A:ASP236 3.7 22.2 1.0
CG A:ASP236 4.1 20.8 1.0
CB A:ASP236 4.6 17.2 1.0
OD1 A:ASP236 4.6 20.4 1.0
CA A:CYS255 4.7 15.6 1.0
CD1 A:PHE238 4.7 22.8 1.0
CE2 A:PHE238 4.7 23.5 1.0

Mercury binding site 3 out of 4 in 2ga8

Go back to Mercury Binding Sites List in 2ga8
Mercury binding site 3 out of 4 in the Crystal Structure of YFH7 From Saccharomyces Cerevisiae: A Putative P-Loop Containing Kinase with A Circular Permutation.


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 3 of Crystal Structure of YFH7 From Saccharomyces Cerevisiae: A Putative P-Loop Containing Kinase with A Circular Permutation. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg362

b:38.6
occ:0.30
O A:CYS170 2.5 19.8 1.0
SG A:CYS170 2.6 29.2 1.0
CE1 A:PHE174 2.8 34.8 1.0
C A:CYS170 2.9 21.7 1.0
CD1 A:PHE174 3.1 35.1 1.0
CB A:VAL101 3.3 23.0 1.0
CB A:CYS170 3.4 24.8 1.0
N A:LEU171 3.5 22.4 1.0
CA A:CYS170 3.6 22.9 1.0
CA A:LEU171 3.8 24.0 1.0
CD1 A:LEU166 3.8 14.8 1.0
CG1 A:VAL101 3.8 24.2 1.0
O A:VAL101 3.9 21.0 1.0
CG2 A:VAL101 3.9 23.7 1.0
CZ A:PHE174 4.0 34.4 1.0
CA A:VAL101 4.2 22.6 1.0
C A:VAL101 4.3 21.8 1.0
CD2 A:LEU171 4.3 23.2 1.0
CB A:LEU166 4.5 14.8 1.0
CG A:PHE174 4.5 34.4 1.0
CG A:LEU166 4.6 13.1 1.0
C A:LEU171 4.7 25.1 1.0
CD2 A:LEU166 4.8 13.5 1.0
N A:CYS170 4.9 22.4 1.0
CB A:LEU171 4.9 23.0 1.0
CG A:LEU171 4.9 24.1 1.0
N A:PHE174 4.9 32.3 1.0

Mercury binding site 4 out of 4 in 2ga8

Go back to Mercury Binding Sites List in 2ga8
Mercury binding site 4 out of 4 in the Crystal Structure of YFH7 From Saccharomyces Cerevisiae: A Putative P-Loop Containing Kinase with A Circular Permutation.


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 4 of Crystal Structure of YFH7 From Saccharomyces Cerevisiae: A Putative P-Loop Containing Kinase with A Circular Permutation. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg406

b:29.1
occ:0.30
S2 A:BME501 1.8 31.3 0.3
O A:HOH662 2.6 37.2 1.0
C2 A:BME501 2.9 29.3 0.3
C1 A:BME501 3.3 29.9 0.3
O A:HOH680 3.4 33.6 1.0
CD2 A:LEU332 3.6 19.6 1.0
CG A:PRO33 3.8 16.8 1.0
CB A:PRO33 3.9 16.6 1.0
O1 A:BME501 4.0 30.8 0.3
O A:HOH651 4.5 40.2 1.0
O A:HOH586 4.9 29.1 1.0

Reference:

V.Gueguen-Chaignon, V.Chaptal, L.Lariviere, N.Costa, P.Lopes, S.Morera, S.Nessler. Crystal Structure and Functional Analysis Identify the P-Loop Containing Protein YFH7 of Saccharomyces Cerevisiae As An Atp-Dependent Kinase. Proteins V. 71 804 2007.
ISSN: ISSN 0887-3585
PubMed: 18004758
DOI: 10.1002/PROT.21740
Page generated: Wed Oct 28 18:41:33 2020

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