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Mercury in PDB 2gv9: Crystal Structure of the Herpes Simplex Virus Type 1 Dna Polymerase

Enzymatic activity of Crystal Structure of the Herpes Simplex Virus Type 1 Dna Polymerase

All present enzymatic activity of Crystal Structure of the Herpes Simplex Virus Type 1 Dna Polymerase:
2.7.7.7;

Protein crystallography data

The structure of Crystal Structure of the Herpes Simplex Virus Type 1 Dna Polymerase, PDB code: 2gv9 was solved by S.Liu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.30 / 2.68
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 103.917, 125.550, 220.577, 90.00, 90.00, 90.00
R / Rfree (%) 22.2 / 28.1

Mercury Binding Sites:

The binding sites of Mercury atom in the Crystal Structure of the Herpes Simplex Virus Type 1 Dna Polymerase (pdb code 2gv9). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total only one binding site of Mercury was determined in the Crystal Structure of the Herpes Simplex Virus Type 1 Dna Polymerase, PDB code: 2gv9:

Mercury binding site 1 out of 1 in 2gv9

Go back to Mercury Binding Sites List in 2gv9
Mercury binding site 1 out of 1 in the Crystal Structure of the Herpes Simplex Virus Type 1 Dna Polymerase


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Crystal Structure of the Herpes Simplex Virus Type 1 Dna Polymerase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg1238

b:0.1
occ:1.00
SG B:CYS71 2.6 54.9 1.0
O B:GLU73 3.2 50.1 1.0
CB B:CYS71 3.3 51.9 1.0
CA B:CYS71 3.6 50.7 1.0
N B:ASP72 4.2 51.5 1.0
C B:CYS71 4.2 50.5 1.0
C B:GLU73 4.2 50.0 1.0
N B:GLU73 4.3 51.0 1.0
O B:GLU70 4.4 52.0 1.0
CE1 B:TYR68 4.5 44.2 1.0
N B:CYS71 4.8 51.4 1.0
CD1 B:TYR68 4.8 47.8 1.0
CA B:GLU73 4.9 51.6 1.0

Reference:

S.Liu, J.D.Knafels, J.S.Chang, G.A.Waszak, E.T.Baldwin, M.R.Deibel, D.R.Thomsen, F.L.Homa, P.A.Wells, M.C.Tory, R.A.Poorman, H.Gao, X.Qiu, A.P.Seddon. Crystal Structure of the Herpes Simplex Virus 1 Dna Polymerase. J.Biol.Chem. V. 281 18193 2006.
ISSN: ISSN 0021-9258
PubMed: 16638752
DOI: 10.1074/JBC.M602414200
Page generated: Sun Dec 13 19:07:02 2020

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