Mercury in PDB 2o1g: Natural Occurring Mutant of Human Abo(H) Galactosyltransferase: Gtb/M214T
Protein crystallography data
The structure of Natural Occurring Mutant of Human Abo(H) Galactosyltransferase: Gtb/M214T, PDB code: 2o1g
was solved by
J.A.Letts,
S.N.Borisova,
S.V.Evans,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
20.00 /
1.71
|
Space group
|
C 2 2 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
52.720,
150.160,
79.550,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
18.3 /
21.8
|
Mercury Binding Sites:
The binding sites of Mercury atom in the Natural Occurring Mutant of Human Abo(H) Galactosyltransferase: Gtb/M214T
(pdb code 2o1g). This binding sites where shown within
5.0 Angstroms radius around Mercury atom.
In total 5 binding sites of Mercury where determined in the
Natural Occurring Mutant of Human Abo(H) Galactosyltransferase: Gtb/M214T, PDB code: 2o1g:
Jump to Mercury binding site number:
1;
2;
3;
4;
5;
Mercury binding site 1 out
of 5 in 2o1g
Go back to
Mercury Binding Sites List in 2o1g
Mercury binding site 1 out
of 5 in the Natural Occurring Mutant of Human Abo(H) Galactosyltransferase: Gtb/M214T
Mono view
Stereo pair view
|
A full contact list of Mercury with other atoms in the Hg binding
site number 1 of Natural Occurring Mutant of Human Abo(H) Galactosyltransferase: Gtb/M214T within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Hg401
b:32.8
occ:0.50
|
SG
|
A:CYS284
|
2.5
|
18.4
|
0.5
|
O
|
A:HOH507
|
2.5
|
31.6
|
1.0
|
O
|
A:HIS305
|
3.1
|
20.0
|
1.0
|
CA
|
A:CYS284
|
3.3
|
22.8
|
0.5
|
CA
|
A:CYS284
|
3.3
|
25.8
|
0.5
|
N
|
A:CYS284
|
3.4
|
25.6
|
0.5
|
N
|
A:CYS284
|
3.4
|
22.7
|
0.5
|
CB
|
A:CYS284
|
3.4
|
22.3
|
0.5
|
O
|
A:HOH460
|
3.5
|
31.0
|
1.0
|
CB
|
A:TYR309
|
3.6
|
18.8
|
1.0
|
C
|
A:HIS305
|
3.8
|
21.1
|
1.0
|
CB
|
A:CYS284
|
3.8
|
26.5
|
0.5
|
C
|
A:ALA283
|
3.8
|
24.7
|
1.0
|
CB
|
A:HIS305
|
3.9
|
23.3
|
1.0
|
O
|
A:ALA283
|
4.0
|
26.1
|
1.0
|
CD1
|
A:TYR309
|
4.0
|
18.8
|
1.0
|
CG
|
A:TYR309
|
4.2
|
14.8
|
1.0
|
CA
|
A:TYR309
|
4.2
|
19.5
|
1.0
|
CA
|
A:HIS305
|
4.3
|
22.3
|
1.0
|
CB
|
A:ALA283
|
4.3
|
22.9
|
1.0
|
N
|
A:TYR309
|
4.3
|
20.4
|
1.0
|
O
|
A:HOH555
|
4.4
|
40.7
|
1.0
|
O
|
A:LEU280
|
4.6
|
20.4
|
1.0
|
N
|
A:LEU306
|
4.6
|
19.7
|
1.0
|
C
|
A:CYS284
|
4.6
|
25.9
|
0.5
|
C
|
A:CYS284
|
4.7
|
24.4
|
0.5
|
SG
|
A:CYS284
|
4.7
|
30.4
|
0.5
|
CA
|
A:ALA283
|
4.7
|
24.8
|
1.0
|
CB
|
A:ALA287
|
4.8
|
26.5
|
1.0
|
CG
|
A:HIS305
|
4.8
|
26.3
|
1.0
|
HG
|
A:HG403
|
4.8
|
33.2
|
0.5
|
CD2
|
A:HIS305
|
4.9
|
29.5
|
1.0
|
O
|
A:CYS284
|
4.9
|
24.6
|
0.5
|
|
Mercury binding site 2 out
of 5 in 2o1g
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Mercury Binding Sites List in 2o1g
Mercury binding site 2 out
of 5 in the Natural Occurring Mutant of Human Abo(H) Galactosyltransferase: Gtb/M214T
Mono view
Stereo pair view
|
A full contact list of Mercury with other atoms in the Hg binding
site number 2 of Natural Occurring Mutant of Human Abo(H) Galactosyltransferase: Gtb/M214T within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Hg402
b:39.7
occ:0.20
|
SD
|
A:MET288
|
2.5
|
39.3
|
1.0
|
SG
|
A:CYS284
|
2.7
|
30.4
|
0.5
|
CB
|
A:CYS284
|
3.7
|
26.5
|
0.5
|
O
|
A:CYS284
|
3.7
|
24.0
|
0.5
|
CE
|
A:MET288
|
3.7
|
39.7
|
1.0
|
C
|
A:CYS284
|
3.7
|
24.4
|
0.5
|
N
|
A:HIS285
|
3.8
|
25.4
|
1.0
|
CB
|
A:CYS284
|
3.9
|
22.3
|
0.5
|
C
|
A:CYS284
|
3.9
|
25.9
|
0.5
|
CG
|
A:MET288
|
3.9
|
30.7
|
1.0
|
CA
|
A:HIS285
|
4.0
|
27.9
|
1.0
|
O
|
A:CYS284
|
4.2
|
24.6
|
0.5
|
OD2
|
A:ASP302
|
4.3
|
41.9
|
1.0
|
CA
|
A:CYS284
|
4.4
|
25.8
|
0.5
|
CG
|
A:ASP302
|
4.4
|
37.9
|
1.0
|
OD1
|
A:ASP302
|
4.4
|
43.6
|
1.0
|
CA
|
A:CYS284
|
4.5
|
22.8
|
0.5
|
CB
|
A:MET288
|
4.6
|
28.6
|
1.0
|
CB
|
A:HIS285
|
4.6
|
28.9
|
1.0
|
O
|
A:THR281
|
4.8
|
23.4
|
1.0
|
HG
|
A:HG403
|
4.9
|
33.2
|
0.5
|
|
Mercury binding site 3 out
of 5 in 2o1g
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Mercury Binding Sites List in 2o1g
Mercury binding site 3 out
of 5 in the Natural Occurring Mutant of Human Abo(H) Galactosyltransferase: Gtb/M214T
Mono view
Stereo pair view
|
A full contact list of Mercury with other atoms in the Hg binding
site number 3 of Natural Occurring Mutant of Human Abo(H) Galactosyltransferase: Gtb/M214T within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Hg403
b:33.2
occ:0.50
|
SG
|
A:CYS284
|
2.4
|
18.4
|
0.5
|
SG
|
A:CYS284
|
2.8
|
30.4
|
0.5
|
CB
|
A:CYS284
|
3.0
|
22.3
|
0.5
|
CB
|
A:CYS284
|
3.0
|
26.5
|
0.5
|
CD2
|
A:LEU280
|
3.3
|
23.1
|
1.0
|
N
|
A:LEU306
|
3.7
|
19.7
|
1.0
|
CA
|
A:LEU306
|
3.8
|
19.2
|
1.0
|
O
|
A:ASP302
|
3.9
|
24.4
|
1.0
|
CB
|
A:LEU306
|
4.0
|
19.2
|
1.0
|
CD1
|
A:LEU306
|
4.3
|
21.0
|
1.0
|
C
|
A:HIS305
|
4.4
|
21.1
|
1.0
|
CA
|
A:CYS284
|
4.4
|
25.8
|
0.5
|
CG
|
A:LEU280
|
4.5
|
21.1
|
1.0
|
CA
|
A:CYS284
|
4.5
|
22.8
|
0.5
|
O
|
A:LEU280
|
4.5
|
20.4
|
1.0
|
O
|
A:HOH584
|
4.6
|
49.0
|
1.0
|
CB
|
A:HIS305
|
4.6
|
23.3
|
1.0
|
HG
|
A:HG401
|
4.8
|
32.8
|
0.5
|
C
|
A:ASP302
|
4.8
|
24.9
|
1.0
|
O
|
A:HIS305
|
4.9
|
20.0
|
1.0
|
CG
|
A:LEU306
|
4.9
|
19.1
|
1.0
|
HG
|
A:HG402
|
4.9
|
39.7
|
0.2
|
|
Mercury binding site 4 out
of 5 in 2o1g
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Mercury Binding Sites List in 2o1g
Mercury binding site 4 out
of 5 in the Natural Occurring Mutant of Human Abo(H) Galactosyltransferase: Gtb/M214T
Mono view
Stereo pair view
|
A full contact list of Mercury with other atoms in the Hg binding
site number 4 of Natural Occurring Mutant of Human Abo(H) Galactosyltransferase: Gtb/M214T within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Hg404
b:30.4
occ:0.80
|
O
|
A:HOH517
|
1.4
|
21.3
|
1.0
|
SG
|
A:CYS209
|
2.3
|
25.4
|
1.0
|
O
|
A:HOH577
|
2.4
|
26.9
|
1.0
|
OG1
|
A:THR119
|
2.8
|
23.2
|
1.0
|
CB
|
A:CYS209
|
3.3
|
20.8
|
1.0
|
O
|
A:HOH406
|
3.6
|
15.0
|
1.0
|
CB
|
A:THR119
|
3.8
|
22.7
|
1.0
|
CG2
|
A:THR119
|
4.0
|
24.1
|
1.0
|
CA
|
A:CYS209
|
4.1
|
18.9
|
1.0
|
CG1
|
A:VAL277
|
4.4
|
15.7
|
1.0
|
N
|
A:CYS209
|
4.8
|
17.2
|
1.0
|
CD1
|
A:LEU207
|
4.8
|
25.0
|
1.0
|
CZ
|
A:PHE270
|
4.9
|
22.3
|
1.0
|
CE1
|
A:PHE270
|
5.0
|
20.6
|
1.0
|
|
Mercury binding site 5 out
of 5 in 2o1g
Go back to
Mercury Binding Sites List in 2o1g
Mercury binding site 5 out
of 5 in the Natural Occurring Mutant of Human Abo(H) Galactosyltransferase: Gtb/M214T
Mono view
Stereo pair view
|
A full contact list of Mercury with other atoms in the Hg binding
site number 5 of Natural Occurring Mutant of Human Abo(H) Galactosyltransferase: Gtb/M214T within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Hg405
b:30.8
occ:0.80
|
SG
|
A:CYS80
|
2.2
|
33.3
|
1.0
|
O
|
A:GLY98
|
2.8
|
25.0
|
1.0
|
CB
|
A:CYS80
|
3.1
|
28.5
|
1.0
|
O
|
A:HOH496
|
3.3
|
42.8
|
1.0
|
O
|
A:HOH508
|
3.4
|
32.1
|
1.0
|
CA
|
A:CYS80
|
3.4
|
29.4
|
1.0
|
O
|
A:HOH504
|
3.7
|
30.5
|
1.0
|
O
|
A:HOH464
|
3.7
|
31.5
|
1.0
|
C
|
A:GLY98
|
4.0
|
23.0
|
1.0
|
O
|
A:HOH583
|
4.0
|
35.7
|
1.0
|
O
|
A:HOH425
|
4.0
|
30.4
|
1.0
|
N
|
A:CYS80
|
4.2
|
30.1
|
1.0
|
CA
|
A:THR99
|
4.3
|
19.1
|
1.0
|
O
|
A:THR99
|
4.5
|
22.7
|
1.0
|
C
|
A:THR99
|
4.6
|
19.2
|
1.0
|
C
|
A:CYS80
|
4.6
|
29.4
|
1.0
|
N
|
A:THR99
|
4.7
|
19.0
|
1.0
|
O
|
A:CYS80
|
4.7
|
30.3
|
1.0
|
|
Reference:
M.Persson,
J.A.Letts,
B.Hosseini-Maaf,
S.N.Borisova,
M.M.Palcic,
S.V.Evans,
M.L.Olsson.
Structural Effects of Naturally Occurring Human Blood Group B Galactosyltransferase Mutations Adjacent to the Dxd Motif. J.Biol.Chem. V. 282 9564 2007.
ISSN: ISSN 0021-9258
PubMed: 17259183
DOI: 10.1074/JBC.M610998200
Page generated: Sun Aug 11 02:53:29 2024
|