Atomistry » Mercury » PDB 2o1g-3b4f » 2o1g
Atomistry »
  Mercury »
    PDB 2o1g-3b4f »
      2o1g »

Mercury in PDB 2o1g: Natural Occurring Mutant of Human Abo(H) Galactosyltransferase: Gtb/M214T

Protein crystallography data

The structure of Natural Occurring Mutant of Human Abo(H) Galactosyltransferase: Gtb/M214T, PDB code: 2o1g was solved by J.A.Letts, S.N.Borisova, S.V.Evans, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.71
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 52.720, 150.160, 79.550, 90.00, 90.00, 90.00
R / Rfree (%) 18.3 / 21.8

Mercury Binding Sites:

The binding sites of Mercury atom in the Natural Occurring Mutant of Human Abo(H) Galactosyltransferase: Gtb/M214T (pdb code 2o1g). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 5 binding sites of Mercury where determined in the Natural Occurring Mutant of Human Abo(H) Galactosyltransferase: Gtb/M214T, PDB code: 2o1g:
Jump to Mercury binding site number: 1; 2; 3; 4; 5;

Mercury binding site 1 out of 5 in 2o1g

Go back to Mercury Binding Sites List in 2o1g
Mercury binding site 1 out of 5 in the Natural Occurring Mutant of Human Abo(H) Galactosyltransferase: Gtb/M214T


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Natural Occurring Mutant of Human Abo(H) Galactosyltransferase: Gtb/M214T within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg401

b:32.8
occ:0.50
SG A:CYS284 2.5 18.4 0.5
O A:HOH507 2.5 31.6 1.0
O A:HIS305 3.1 20.0 1.0
CA A:CYS284 3.3 22.8 0.5
CA A:CYS284 3.3 25.8 0.5
N A:CYS284 3.4 25.6 0.5
N A:CYS284 3.4 22.7 0.5
CB A:CYS284 3.4 22.3 0.5
O A:HOH460 3.5 31.0 1.0
CB A:TYR309 3.6 18.8 1.0
C A:HIS305 3.8 21.1 1.0
CB A:CYS284 3.8 26.5 0.5
C A:ALA283 3.8 24.7 1.0
CB A:HIS305 3.9 23.3 1.0
O A:ALA283 4.0 26.1 1.0
CD1 A:TYR309 4.0 18.8 1.0
CG A:TYR309 4.2 14.8 1.0
CA A:TYR309 4.2 19.5 1.0
CA A:HIS305 4.3 22.3 1.0
CB A:ALA283 4.3 22.9 1.0
N A:TYR309 4.3 20.4 1.0
O A:HOH555 4.4 40.7 1.0
O A:LEU280 4.6 20.4 1.0
N A:LEU306 4.6 19.7 1.0
C A:CYS284 4.6 25.9 0.5
C A:CYS284 4.7 24.4 0.5
SG A:CYS284 4.7 30.4 0.5
CA A:ALA283 4.7 24.8 1.0
CB A:ALA287 4.8 26.5 1.0
CG A:HIS305 4.8 26.3 1.0
HG A:HG403 4.8 33.2 0.5
CD2 A:HIS305 4.9 29.5 1.0
O A:CYS284 4.9 24.6 0.5

Mercury binding site 2 out of 5 in 2o1g

Go back to Mercury Binding Sites List in 2o1g
Mercury binding site 2 out of 5 in the Natural Occurring Mutant of Human Abo(H) Galactosyltransferase: Gtb/M214T


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of Natural Occurring Mutant of Human Abo(H) Galactosyltransferase: Gtb/M214T within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg402

b:39.7
occ:0.20
SD A:MET288 2.5 39.3 1.0
SG A:CYS284 2.7 30.4 0.5
CB A:CYS284 3.7 26.5 0.5
O A:CYS284 3.7 24.0 0.5
CE A:MET288 3.7 39.7 1.0
C A:CYS284 3.7 24.4 0.5
N A:HIS285 3.8 25.4 1.0
CB A:CYS284 3.9 22.3 0.5
C A:CYS284 3.9 25.9 0.5
CG A:MET288 3.9 30.7 1.0
CA A:HIS285 4.0 27.9 1.0
O A:CYS284 4.2 24.6 0.5
OD2 A:ASP302 4.3 41.9 1.0
CA A:CYS284 4.4 25.8 0.5
CG A:ASP302 4.4 37.9 1.0
OD1 A:ASP302 4.4 43.6 1.0
CA A:CYS284 4.5 22.8 0.5
CB A:MET288 4.6 28.6 1.0
CB A:HIS285 4.6 28.9 1.0
O A:THR281 4.8 23.4 1.0
HG A:HG403 4.9 33.2 0.5

Mercury binding site 3 out of 5 in 2o1g

Go back to Mercury Binding Sites List in 2o1g
Mercury binding site 3 out of 5 in the Natural Occurring Mutant of Human Abo(H) Galactosyltransferase: Gtb/M214T


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 3 of Natural Occurring Mutant of Human Abo(H) Galactosyltransferase: Gtb/M214T within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg403

b:33.2
occ:0.50
SG A:CYS284 2.4 18.4 0.5
SG A:CYS284 2.8 30.4 0.5
CB A:CYS284 3.0 22.3 0.5
CB A:CYS284 3.0 26.5 0.5
CD2 A:LEU280 3.3 23.1 1.0
N A:LEU306 3.7 19.7 1.0
CA A:LEU306 3.8 19.2 1.0
O A:ASP302 3.9 24.4 1.0
CB A:LEU306 4.0 19.2 1.0
CD1 A:LEU306 4.3 21.0 1.0
C A:HIS305 4.4 21.1 1.0
CA A:CYS284 4.4 25.8 0.5
CG A:LEU280 4.5 21.1 1.0
CA A:CYS284 4.5 22.8 0.5
O A:LEU280 4.5 20.4 1.0
O A:HOH584 4.6 49.0 1.0
CB A:HIS305 4.6 23.3 1.0
HG A:HG401 4.8 32.8 0.5
C A:ASP302 4.8 24.9 1.0
O A:HIS305 4.9 20.0 1.0
CG A:LEU306 4.9 19.1 1.0
HG A:HG402 4.9 39.7 0.2

Mercury binding site 4 out of 5 in 2o1g

Go back to Mercury Binding Sites List in 2o1g
Mercury binding site 4 out of 5 in the Natural Occurring Mutant of Human Abo(H) Galactosyltransferase: Gtb/M214T


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 4 of Natural Occurring Mutant of Human Abo(H) Galactosyltransferase: Gtb/M214T within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg404

b:30.4
occ:0.80
O A:HOH517 1.4 21.3 1.0
SG A:CYS209 2.3 25.4 1.0
O A:HOH577 2.4 26.9 1.0
OG1 A:THR119 2.8 23.2 1.0
CB A:CYS209 3.3 20.8 1.0
O A:HOH406 3.6 15.0 1.0
CB A:THR119 3.8 22.7 1.0
CG2 A:THR119 4.0 24.1 1.0
CA A:CYS209 4.1 18.9 1.0
CG1 A:VAL277 4.4 15.7 1.0
N A:CYS209 4.8 17.2 1.0
CD1 A:LEU207 4.8 25.0 1.0
CZ A:PHE270 4.9 22.3 1.0
CE1 A:PHE270 5.0 20.6 1.0

Mercury binding site 5 out of 5 in 2o1g

Go back to Mercury Binding Sites List in 2o1g
Mercury binding site 5 out of 5 in the Natural Occurring Mutant of Human Abo(H) Galactosyltransferase: Gtb/M214T


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 5 of Natural Occurring Mutant of Human Abo(H) Galactosyltransferase: Gtb/M214T within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg405

b:30.8
occ:0.80
SG A:CYS80 2.2 33.3 1.0
O A:GLY98 2.8 25.0 1.0
CB A:CYS80 3.1 28.5 1.0
O A:HOH496 3.3 42.8 1.0
O A:HOH508 3.4 32.1 1.0
CA A:CYS80 3.4 29.4 1.0
O A:HOH504 3.7 30.5 1.0
O A:HOH464 3.7 31.5 1.0
C A:GLY98 4.0 23.0 1.0
O A:HOH583 4.0 35.7 1.0
O A:HOH425 4.0 30.4 1.0
N A:CYS80 4.2 30.1 1.0
CA A:THR99 4.3 19.1 1.0
O A:THR99 4.5 22.7 1.0
C A:THR99 4.6 19.2 1.0
C A:CYS80 4.6 29.4 1.0
N A:THR99 4.7 19.0 1.0
O A:CYS80 4.7 30.3 1.0

Reference:

M.Persson, J.A.Letts, B.Hosseini-Maaf, S.N.Borisova, M.M.Palcic, S.V.Evans, M.L.Olsson. Structural Effects of Naturally Occurring Human Blood Group B Galactosyltransferase Mutations Adjacent to the Dxd Motif. J.Biol.Chem. V. 282 9564 2007.
ISSN: ISSN 0021-9258
PubMed: 17259183
DOI: 10.1074/JBC.M610998200
Page generated: Sun Aug 11 02:53:29 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy