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Mercury in PDB 2rt8: Structure of Metallo-Dna in Solution

Mercury Binding Sites:

The binding sites of Mercury atom in the Structure of Metallo-Dna in Solution (pdb code 2rt8). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 2 binding sites of Mercury where determined in the Structure of Metallo-Dna in Solution, PDB code: 2rt8:
Jump to Mercury binding site number: 1; 2;

Mercury binding site 1 out of 2 in 2rt8

Go back to Mercury Binding Sites List in 2rt8
Mercury binding site 1 out of 2 in the Structure of Metallo-Dna in Solution


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Structure of Metallo-Dna in Solution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg101

b:0.0
occ:1.00
N3 A:DT5 2.0 0.0 1.0
N3 B:DT16 2.0 0.0 1.0
C4 A:DT5 2.9 0.0 1.0
C4 B:DT16 2.9 0.0 1.0
C2 B:DT16 3.0 0.0 1.0
C2 A:DT5 3.0 0.0 1.0
O4 A:DT5 3.0 0.0 1.0
O4 B:DT16 3.0 0.0 1.0
O2 B:DT16 3.1 0.0 1.0
O2 A:DT5 3.1 0.0 1.0
H1 A:DG4 3.7 0.0 1.0
H41 B:DC17 3.9 0.0 1.0
N1 A:DG4 3.9 0.0 1.0
N3 B:DC17 4.0 0.0 1.0
HG A:HG102 4.1 0.0 1.0
O6 A:DG4 4.1 0.0 1.0
C6 A:DG4 4.2 0.0 1.0
N4 B:DC17 4.2 0.0 1.0
C4 B:DC17 4.2 0.0 1.0
N1 B:DT16 4.3 0.0 1.0
C5 A:DT5 4.3 0.0 1.0
N1 A:DT5 4.3 0.0 1.0
C5 B:DT16 4.3 0.0 1.0
N3 B:DT15 4.5 0.0 1.0
C2 A:DG4 4.6 0.0 1.0
N3 A:DT6 4.7 0.0 1.0
C2 B:DC17 4.7 0.0 1.0
H21 A:DG4 4.7 0.0 1.0
C6 A:DT5 4.7 0.0 1.0
C6 B:DT16 4.8 0.0 1.0
H42 B:DC17 4.8 0.0 1.0
N2 A:DG4 4.9 0.0 1.0
C2 B:DT15 5.0 0.0 1.0
C4 B:DT15 5.0 0.0 1.0
C5 A:DG4 5.0 0.0 1.0

Mercury binding site 2 out of 2 in 2rt8

Go back to Mercury Binding Sites List in 2rt8
Mercury binding site 2 out of 2 in the Structure of Metallo-Dna in Solution


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of Structure of Metallo-Dna in Solution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg102

b:0.0
occ:1.00
N3 A:DT6 2.0 0.0 1.0
N3 B:DT15 2.0 0.0 1.0
C4 A:DT6 2.9 0.0 1.0
C4 B:DT15 2.9 0.0 1.0
C2 B:DT15 2.9 0.0 1.0
C2 A:DT6 2.9 0.0 1.0
O4 A:DT6 3.0 0.0 1.0
O4 B:DT15 3.0 0.0 1.0
O2 A:DT6 3.1 0.0 1.0
O2 B:DT15 3.1 0.0 1.0
H1 A:DG7 4.0 0.0 1.0
N1 A:DG7 4.0 0.0 1.0
C6 A:DG7 4.0 0.0 1.0
O6 A:DG7 4.1 0.0 1.0
HG A:HG101 4.1 0.0 1.0
N1 B:DT15 4.2 0.0 1.0
N1 A:DT6 4.2 0.0 1.0
H41 B:DC14 4.3 0.0 1.0
C5 A:DT6 4.3 0.0 1.0
C5 B:DT15 4.3 0.0 1.0
N3 A:DT5 4.5 0.0 1.0
N3 B:DC14 4.6 0.0 1.0
C2 A:DG7 4.6 0.0 1.0
C5 A:DG7 4.6 0.0 1.0
N4 B:DC14 4.7 0.0 1.0
C6 B:DT15 4.7 0.0 1.0
C6 A:DT6 4.7 0.0 1.0
N3 B:DT16 4.8 0.0 1.0
C2 A:DT5 4.9 0.0 1.0
C4 B:DC14 4.9 0.0 1.0
C4 A:DT5 4.9 0.0 1.0
O2 A:DT5 5.0 0.0 1.0

Reference:

H.Yamaguchi, J.Sebera, J.Kondo, S.Oda, T.Komuro, T.Kawamura, T.Dairaku, Y.Kondo, I.Okamoto, A.Ono, J.V.Burda, C.Kojima, V.Sychrovsky, Y.Tanaka. The Structure of Metallo-Dna with Consecutive Thymine-Hgii-Thymine Base Pairs Explains Positive Entropy For the Metallo Base Pair Formation. Nucleic Acids Res. 2013.
ISSN: ESSN 1362-4962
PubMed: 24371287
DOI: 10.1093/NAR/GKT1344
Page generated: Sun Dec 13 19:08:19 2020

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