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Mercury in PDB 2wpv: Crystal Structure of S. Cerevisiae GET4-GET5 Complex

Protein crystallography data

The structure of Crystal Structure of S. Cerevisiae GET4-GET5 Complex, PDB code: 2wpv was solved by Y.-W.Chang, Y.-C.Chuang, Y.-C.Ho, M.-Y.Cheng, Y.-J.Sun, C.-D.Hsiao, C.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.59 / 1.99
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 48.275, 118.770, 168.377, 90.00, 95.17, 90.00
R / Rfree (%) 17.5 / 20.6

Mercury Binding Sites:

The binding sites of Mercury atom in the Crystal Structure of S. Cerevisiae GET4-GET5 Complex (pdb code 2wpv). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 4 binding sites of Mercury where determined in the Crystal Structure of S. Cerevisiae GET4-GET5 Complex, PDB code: 2wpv:
Jump to Mercury binding site number: 1; 2; 3; 4;

Mercury binding site 1 out of 4 in 2wpv

Go back to Mercury Binding Sites List in 2wpv
Mercury binding site 1 out of 4 in the Crystal Structure of S. Cerevisiae GET4-GET5 Complex


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Crystal Structure of S. Cerevisiae GET4-GET5 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg1293

b:53.5
occ:1.00
SG A:CYS255 2.6 19.5 1.0
O A:LEU251 3.2 21.2 1.0
CD2 A:LEU251 3.5 28.8 1.0
N A:CYS255 3.6 20.6 1.0
CZ A:PHE289 3.8 23.3 1.0
CB A:THR254 3.8 23.5 1.0
CE1 A:PHE289 3.8 22.0 1.0
CD1 A:PHE263 3.8 25.2 1.0
CG2 A:THR254 3.9 24.3 1.0
CB A:CYS255 3.9 18.9 1.0
CE1 A:PHE263 3.9 25.9 1.0
C A:LEU251 3.9 21.2 1.0
CA A:LEU251 3.9 22.4 1.0
CA A:CYS255 4.0 19.6 1.0
CB A:LEU251 4.2 24.3 1.0
C A:THR254 4.3 22.4 1.0
CG A:LEU251 4.4 27.0 1.0
CD1 A:LEU284 4.5 18.4 1.0
CA A:THR254 4.6 22.1 1.0
OG1 A:THR254 4.9 23.3 1.0
CB A:LEU284 4.9 19.5 1.0
CG A:PHE263 5.0 25.1 1.0

Mercury binding site 2 out of 4 in 2wpv

Go back to Mercury Binding Sites List in 2wpv
Mercury binding site 2 out of 4 in the Crystal Structure of S. Cerevisiae GET4-GET5 Complex


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of Crystal Structure of S. Cerevisiae GET4-GET5 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Hg1293

b:48.0
occ:1.00
SG C:CYS255 2.6 16.9 1.0
O C:LEU251 3.0 16.0 1.0
CD1 C:LEU251 3.0 25.0 1.0
N C:CYS255 3.5 18.1 1.0
CG C:LEU251 3.6 21.6 1.0
CE2 C:PHE289 3.7 20.7 1.0
CB C:CYS255 3.8 15.2 1.0
CZ C:PHE289 3.8 20.9 1.0
CD1 C:PHE263 3.8 20.5 1.0
C C:LEU251 3.9 18.7 1.0
CA C:CYS255 3.9 16.0 1.0
CE1 C:PHE263 3.9 23.5 1.0
CB C:THR254 4.0 18.6 1.0
CA C:LEU251 4.1 17.9 1.0
C C:THR254 4.2 18.6 1.0
CG2 C:THR254 4.2 19.6 1.0
CB C:LEU251 4.4 20.6 1.0
CD1 C:LEU284 4.4 15.7 1.0
CA C:THR254 4.6 17.8 1.0
CD2 C:LEU251 4.8 24.3 1.0
CB C:LEU284 4.9 14.7 1.0
O C:THR254 5.0 17.4 1.0
OG1 C:THR254 5.0 17.4 1.0

Mercury binding site 3 out of 4 in 2wpv

Go back to Mercury Binding Sites List in 2wpv
Mercury binding site 3 out of 4 in the Crystal Structure of S. Cerevisiae GET4-GET5 Complex


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 3 of Crystal Structure of S. Cerevisiae GET4-GET5 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Hg1293

b:44.7
occ:1.00
SG E:CYS255 2.7 13.9 1.0
CD1 E:LEU251 2.9 22.6 1.0
O E:LEU251 3.1 16.1 1.0
N E:CYS255 3.6 13.9 1.0
CG E:LEU251 3.6 20.7 1.0
CZ E:PHE289 3.8 14.3 1.0
CE1 E:PHE289 3.8 14.7 1.0
CB E:CYS255 3.8 14.4 1.0
CD2 E:PHE263 3.9 19.4 1.0
CA E:CYS255 4.0 14.0 1.0
C E:LEU251 4.0 17.4 1.0
CE2 E:PHE263 4.0 19.8 1.0
CB E:THR254 4.0 17.0 1.0
CA E:LEU251 4.2 16.8 1.0
CG2 E:THR254 4.2 18.1 1.0
C E:THR254 4.3 15.8 1.0
CB E:LEU251 4.5 18.6 1.0
CD1 E:LEU284 4.6 13.4 1.0
CA E:THR254 4.7 15.1 1.0
CD2 E:LEU251 4.9 20.5 1.0
CB E:LEU284 4.9 13.7 1.0

Mercury binding site 4 out of 4 in 2wpv

Go back to Mercury Binding Sites List in 2wpv
Mercury binding site 4 out of 4 in the Crystal Structure of S. Cerevisiae GET4-GET5 Complex


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 4 of Crystal Structure of S. Cerevisiae GET4-GET5 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Hg1293

b:51.7
occ:1.00
SG G:CYS255 2.7 18.1 1.0
CD1 G:LEU251 3.0 26.4 1.0
O G:LEU251 3.0 20.1 1.0
CG G:LEU251 3.5 26.3 1.0
N G:CYS255 3.6 18.1 1.0
CE2 G:PHE289 3.7 20.7 1.0
CB G:CYS255 3.8 16.1 1.0
CZ G:PHE289 3.8 20.0 1.0
C G:LEU251 3.8 21.4 1.0
CD1 G:PHE263 3.9 19.4 1.0
CA G:CYS255 3.9 17.7 1.0
CB G:THR254 4.0 19.1 1.0
CA G:LEU251 4.0 21.9 1.0
CE1 G:PHE263 4.1 19.7 1.0
CG2 G:THR254 4.2 17.5 1.0
C G:THR254 4.2 18.5 1.0
CB G:LEU251 4.3 23.1 1.0
CD1 G:LEU284 4.6 16.8 1.0
CA G:THR254 4.7 17.5 1.0
CD2 G:LEU251 4.7 27.1 1.0
O G:THR254 5.0 16.7 1.0

Reference:

Y.-W.Chang, Y.-C.Chuang, Y.-C.Ho, M.-Y.Cheng, Y.-J.Sun, C.-D.Hsiao, C.Wang. Crystal Structure of GET4-GET5 Complex and Its Interactions with SGT2, GET3, and YDJ1. J.Biol.Chem. V. 285 9962 2010.
ISSN: ISSN 0021-9258
PubMed: 20106980
DOI: 10.1074/JBC.M109.087098
Page generated: Wed Oct 28 18:42:04 2020

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