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Mercury in PDB 3duz: Crystal Structure of the Postfusion Form of Baculovirus Fusion Protein GP64

Protein crystallography data

The structure of Crystal Structure of the Postfusion Form of Baculovirus Fusion Protein GP64, PDB code: 3duz was solved by J.Kadlec, S.Loureiro, N.G.A.Abrescia, I.M.Jones, D.I.Stuart, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.84 / 2.95
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 87.470, 87.470, 431.590, 90.00, 90.00, 120.00
R / Rfree (%) 22.4 / 27

Mercury Binding Sites:

The binding sites of Mercury atom in the Crystal Structure of the Postfusion Form of Baculovirus Fusion Protein GP64 (pdb code 3duz). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 5 binding sites of Mercury where determined in the Crystal Structure of the Postfusion Form of Baculovirus Fusion Protein GP64, PDB code: 3duz:
Jump to Mercury binding site number: 1; 2; 3; 4; 5;

Mercury binding site 1 out of 5 in 3duz

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Mercury binding site 1 out of 5 in the Crystal Structure of the Postfusion Form of Baculovirus Fusion Protein GP64


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Crystal Structure of the Postfusion Form of Baculovirus Fusion Protein GP64 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg1

b:57.8
occ:0.15
ND1 A:HIS152 2.4 49.5 1.0
CH2 A:TRP121 3.0 53.4 1.0
CZ2 A:TRP121 3.2 53.5 1.0
CG A:HIS152 3.2 48.9 1.0
CZ3 A:TRP121 3.3 53.3 1.0
CE1 A:HIS152 3.4 49.0 1.0
CB A:HIS152 3.4 48.4 1.0
CE2 A:TRP121 3.6 53.9 1.0
CE3 A:TRP121 3.8 53.7 1.0
CA A:HIS152 3.9 48.5 1.0
CD2 A:TRP121 3.9 53.6 1.0
CD2 A:HIS152 4.4 48.8 1.0
NE2 A:HIS152 4.4 49.0 1.0
NE1 A:TRP121 4.5 53.4 1.0
O A:ASN151 4.6 48.3 1.0
CG A:TRP121 4.9 52.9 1.0
C A:HIS152 4.9 48.7 1.0
N A:HIS152 4.9 48.4 1.0

Mercury binding site 2 out of 5 in 3duz

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Mercury binding site 2 out of 5 in the Crystal Structure of the Postfusion Form of Baculovirus Fusion Protein GP64


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of Crystal Structure of the Postfusion Form of Baculovirus Fusion Protein GP64 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg2

b:54.3
occ:0.15
NE2 A:HIS156 2.4 48.0 1.0
CE1 A:HIS156 3.0 48.0 1.0
CD2 A:HIS156 3.5 48.0 1.0
CG A:TYR77 3.9 49.5 1.0
CD1 A:TYR77 4.1 50.0 1.0
CB A:TYR77 4.1 48.7 1.0
ND1 A:HIS156 4.2 48.0 1.0
CD2 A:TYR77 4.2 50.2 1.0
CG A:HIS156 4.5 47.8 1.0
CE1 A:TYR77 4.5 50.5 1.0
CE2 A:TYR77 4.7 50.3 1.0
CZ A:TYR77 4.8 50.1 1.0
CB A:ASN85 4.9 50.3 1.0

Mercury binding site 3 out of 5 in 3duz

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Mercury binding site 3 out of 5 in the Crystal Structure of the Postfusion Form of Baculovirus Fusion Protein GP64


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 3 of Crystal Structure of the Postfusion Form of Baculovirus Fusion Protein GP64 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg3

b:56.8
occ:0.30
ND1 A:HIS304 2.3 36.8 1.0
CG A:HIS304 3.1 36.1 1.0
CE1 A:HIS304 3.3 37.3 1.0
CB A:HIS304 3.3 35.8 1.0
O A:ASP301 3.9 35.6 1.0
OE1 A:GLU308 4.1 39.2 1.0
CD1 A:ILE305 4.1 35.7 1.0
N A:ILE305 4.2 35.5 1.0
CD2 A:HIS304 4.3 36.9 1.0
C A:HIS304 4.3 35.7 1.0
NE2 A:HIS304 4.3 38.0 1.0
CA A:HIS304 4.4 35.9 1.0
CG1 A:ILE305 4.4 35.4 1.0
C A:ASP301 4.8 35.6 1.0
CD A:GLU308 4.8 38.2 1.0
CA A:ASP301 4.8 35.4 1.0
CA A:ILE305 4.9 35.5 1.0
O A:HIS304 4.9 35.8 1.0
CB A:ASP301 5.0 35.3 1.0

Mercury binding site 4 out of 5 in 3duz

Go back to Mercury Binding Sites List in 3duz
Mercury binding site 4 out of 5 in the Crystal Structure of the Postfusion Form of Baculovirus Fusion Protein GP64


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 4 of Crystal Structure of the Postfusion Form of Baculovirus Fusion Protein GP64 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg4

b:64.9
occ:0.20
NE2 A:HIS155 2.4 51.2 1.0
CD2 A:HIS155 3.1 50.5 1.0
CE1 A:HIS155 3.6 51.0 1.0
CG A:HIS155 4.3 49.8 1.0
O A:PHE153 4.5 49.1 1.0
ND1 A:HIS155 4.6 50.6 1.0
CZ3 A:TRP121 4.7 53.3 1.0

Mercury binding site 5 out of 5 in 3duz

Go back to Mercury Binding Sites List in 3duz
Mercury binding site 5 out of 5 in the Crystal Structure of the Postfusion Form of Baculovirus Fusion Protein GP64


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 5 of Crystal Structure of the Postfusion Form of Baculovirus Fusion Protein GP64 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg5

b:99.5
occ:0.20
NE2 A:HIS378 2.4 99.1 1.0
CE1 A:HIS378 3.2 99.3 1.0
CD2 A:HIS378 3.3 98.8 1.0
CE A:LYS389 3.4 98.3 1.0
CD A:LYS389 3.7 98.5 1.0
CG A:LYS389 4.2 98.8 1.0
ND1 A:HIS378 4.3 99.1 1.0
CG A:HIS378 4.3 98.5 1.0
NZ A:LYS389 4.8 98.1 1.0

Reference:

J.Kadlec, S.Loureiro, N.G.Abrescia, D.I.Stuart, I.M.Jones. The Postfusion Structure of Baculovirus GP64 Supports A Unified View of Viral Fusion Machines. Nat.Struct.Mol.Biol. V. 15 1024 2008.
ISSN: ISSN 1545-9993
PubMed: 18776902
DOI: 10.1038/NSMB.1484
Page generated: Sun Dec 13 19:09:14 2020

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