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Mercury in PDB 3efu: X-Ray Structure of Human Ubiquitin-Hg(II) Adduct

Protein crystallography data

The structure of X-Ray Structure of Human Ubiquitin-Hg(II) Adduct, PDB code: 3efu was solved by G.Falini, S.Fermani, G.Tosi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.49 / 1.84
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 28.024, 42.828, 50.374, 90.00, 90.00, 90.00
R / Rfree (%) 23.5 / 29.3

Mercury Binding Sites:

The binding sites of Mercury atom in the X-Ray Structure of Human Ubiquitin-Hg(II) Adduct (pdb code 3efu). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total only one binding site of Mercury was determined in the X-Ray Structure of Human Ubiquitin-Hg(II) Adduct, PDB code: 3efu:

Mercury binding site 1 out of 1 in 3efu

Go back to Mercury Binding Sites List in 3efu
Mercury binding site 1 out of 1 in the X-Ray Structure of Human Ubiquitin-Hg(II) Adduct


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of X-Ray Structure of Human Ubiquitin-Hg(II) Adduct within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg100

b:28.4
occ:0.77
NE2 A:HIS68 2.2 19.2 1.0
O A:HOH198 2.8 27.9 1.0
CD2 A:HIS68 3.0 19.9 1.0
CE1 A:HIS68 3.4 19.6 1.0
O A:HOH109 3.7 22.5 1.0
CG A:HIS68 4.3 17.3 1.0
O A:HOH124 4.3 24.0 1.0
ND1 A:HIS68 4.4 17.9 1.0
O A:HOH120 4.4 17.0 1.0
O A:THR66 4.6 14.1 1.0
CG2 A:THR66 4.7 12.4 1.0
CB A:THR66 4.8 15.2 1.0

Reference:

G.Falini, S.Fermani, G.Tosi, F.Arnesano, G.Natile. Structural Probing of Zn(II), Cd(II) and Hg(II) Binding to Human Ubiquitin. Chem.Commun.(Camb.) V. 45 5960 2008.
ISSN: ISSN 1359-7345
PubMed: 19030552
DOI: 10.1039/B813463D
Page generated: Wed Oct 28 18:42:29 2020

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