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Mercury in PDB 3gfh: Crystal Structure of Eutl Shell Protein of the Bacterial Ethanolamine Micrompartment

Protein crystallography data

The structure of Crystal Structure of Eutl Shell Protein of the Bacterial Ethanolamine Micrompartment, PDB code: 3gfh was solved by M.Sagermann, K.Nikolakakis, A.Ohtaki, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.65 / 2.20
Space group P 3
Cell size a, b, c (Å), α, β, γ (°) 67.384, 67.384, 79.661, 90.00, 90.00, 120.00
R / Rfree (%) 22.3 / 27.8

Mercury Binding Sites:

The binding sites of Mercury atom in the Crystal Structure of Eutl Shell Protein of the Bacterial Ethanolamine Micrompartment (pdb code 3gfh). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 2 binding sites of Mercury where determined in the Crystal Structure of Eutl Shell Protein of the Bacterial Ethanolamine Micrompartment, PDB code: 3gfh:
Jump to Mercury binding site number: 1; 2;

Mercury binding site 1 out of 2 in 3gfh

Go back to Mercury Binding Sites List in 3gfh
Mercury binding site 1 out of 2 in the Crystal Structure of Eutl Shell Protein of the Bacterial Ethanolamine Micrompartment


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Crystal Structure of Eutl Shell Protein of the Bacterial Ethanolamine Micrompartment within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg800

b:59.3
occ:0.50
O A:CYS197 2.0 31.3 1.0
CB A:ALA149 2.5 18.0 1.0
SG A:CYS201 2.5 12.2 1.0
CB A:CYS197 2.7 32.9 1.0
C A:CYS197 2.8 31.9 1.0
CA A:CYS197 3.0 32.8 1.0
CA A:ALA149 3.0 18.3 1.0
CG2 A:VAL128 3.5 18.9 1.0
N A:ALA149 3.6 18.4 1.0
CA A:VAL128 3.7 16.6 1.0
O A:MET148 3.7 18.7 1.0
C A:MET148 3.9 18.9 1.0
SG A:CYS197 4.0 36.5 1.0
N A:LYS198 4.1 30.1 1.0
CB A:CYS201 4.1 16.0 1.0
CB A:VAL128 4.1 17.0 1.0
N A:VAL128 4.2 16.8 1.0
C A:ALA149 4.4 18.0 1.0
N A:CYS197 4.4 33.0 1.0
O A:HIS127 4.6 14.8 1.0
C A:HIS127 4.6 16.2 1.0
CG1 A:VAL128 4.8 18.6 1.0
N A:TYR150 4.8 17.6 1.0
CA A:LYS198 4.9 29.4 1.0
C A:VAL128 5.0 16.1 1.0

Mercury binding site 2 out of 2 in 3gfh

Go back to Mercury Binding Sites List in 3gfh
Mercury binding site 2 out of 2 in the Crystal Structure of Eutl Shell Protein of the Bacterial Ethanolamine Micrompartment


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of Crystal Structure of Eutl Shell Protein of the Bacterial Ethanolamine Micrompartment within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg800

b:44.0
occ:0.50
O B:CYS197 2.2 27.1 1.0
SG B:CYS201 2.3 8.7 1.0
CB B:ALA149 2.5 15.4 1.0
CA B:ALA149 3.2 15.1 1.0
C B:CYS197 3.2 27.6 1.0
CG2 B:VAL128 3.3 14.2 1.0
O B:HIS127 3.5 9.0 1.0
CA B:VAL128 3.6 12.4 1.0
CB B:CYS197 3.6 27.9 1.0
N B:VAL128 3.7 11.1 1.0
CB B:CYS201 3.7 15.1 1.0
C B:HIS127 3.7 10.7 1.0
CA B:CYS197 3.8 28.2 1.0
CB B:VAL128 4.0 12.2 1.0
N B:ALA149 4.2 15.0 1.0
C B:ALA149 4.2 14.9 1.0
N B:CYS201 4.3 15.4 1.0
CA B:CYS201 4.3 15.0 1.0
N B:TYR150 4.4 14.5 1.0
N B:LYS198 4.4 26.5 1.0
CD1 B:LEU151 4.6 15.3 1.0
N B:HIS127 4.8 10.7 1.0
O B:MET148 4.8 15.3 1.0
CA B:HIS127 4.8 11.4 1.0
CA B:LYS198 4.8 25.8 1.0
C B:MET148 4.8 14.9 1.0
SG B:CYS197 4.9 34.1 1.0

Reference:

M.Sagermann, A.Ohtaki, K.Nikolakakis. Crystal Structure of the Eutl Shell Protein of the Ethanolamine Ammonia Lyase Microcompartment Proc.Natl.Acad.Sci.Usa V. 106 8883 2009.
ISSN: ISSN 0027-8424
PubMed: 19451619
DOI: 10.1073/PNAS.0902324106
Page generated: Wed Oct 28 18:42:35 2020

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