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Mercury in PDB 3h90: Structural Basis For the Autoregulation of the Zinc Transporter Yiip

Protein crystallography data

The structure of Structural Basis For the Autoregulation of the Zinc Transporter Yiip, PDB code: 3h90 was solved by M.Lu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.90
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 105.657, 130.704, 115.757, 90.00, 93.28, 90.00
R / Rfree (%) 26.1 / 27.7

Other elements in 3h90:

The structure of Structural Basis For the Autoregulation of the Zinc Transporter Yiip also contains other interesting chemical elements:

Zinc (Zn) 16 atoms

Mercury Binding Sites:

The binding sites of Mercury atom in the Structural Basis For the Autoregulation of the Zinc Transporter Yiip (pdb code 3h90). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 8 binding sites of Mercury where determined in the Structural Basis For the Autoregulation of the Zinc Transporter Yiip, PDB code: 3h90:
Jump to Mercury binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Mercury binding site 1 out of 8 in 3h90

Go back to Mercury Binding Sites List in 3h90
Mercury binding site 1 out of 8 in the Structural Basis For the Autoregulation of the Zinc Transporter Yiip


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Structural Basis For the Autoregulation of the Zinc Transporter Yiip within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg1

b:88.8
occ:1.00
O A:HOH327 3.2 3.1 1.0
O A:HOH325 3.3 39.5 1.0
CA A:GLU252 3.7 29.4 1.0
OG A:SER229 3.8 19.5 1.0
SG A:CYS287 4.1 55.3 1.0
CB A:SER229 4.2 20.1 1.0
O A:MET251 4.2 22.4 1.0
N A:GLU252 4.2 25.0 1.0
CB A:GLU252 4.2 30.5 1.0
C A:MET251 4.3 21.8 1.0
O A:HOH328 4.4 29.5 1.0
CB A:CYS287 4.5 50.2 1.0
CG A:GLU252 4.5 36.0 1.0
N A:ASP253 4.6 33.5 1.0
O A:HOH329 4.7 56.1 1.0
O A:PRO286 4.7 36.5 1.0
C A:GLU252 4.8 30.8 1.0
O A:GLU250 4.8 15.2 1.0
O A:HOH305 4.9 25.5 1.0

Mercury binding site 2 out of 8 in 3h90

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Mercury binding site 2 out of 8 in the Structural Basis For the Autoregulation of the Zinc Transporter Yiip


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of Structural Basis For the Autoregulation of the Zinc Transporter Yiip within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg2

b:0.1
occ:1.00
CB A:CYS127 2.9 78.3 1.0
CD1 A:ILE26 3.7 0.9 1.0
CA A:CYS127 3.9 76.1 1.0
SG A:CYS127 4.0 80.2 1.0
CD2 A:LEU23 4.1 81.4 1.0
CD1 A:LEU23 4.3 76.1 1.0
CG1 A:ILE26 4.5 0.8 1.0
CG A:LEU23 4.8 78.3 1.0
O A:CYS127 4.9 72.5 1.0
C A:CYS127 4.9 72.9 1.0
N A:CYS127 4.9 76.8 1.0

Mercury binding site 3 out of 8 in 3h90

Go back to Mercury Binding Sites List in 3h90
Mercury binding site 3 out of 8 in the Structural Basis For the Autoregulation of the Zinc Transporter Yiip


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 3 of Structural Basis For the Autoregulation of the Zinc Transporter Yiip within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg3

b:86.2
occ:1.00
O B:HOH360 3.2 23.1 1.0
O B:HOH321 3.7 2.0 1.0
OG B:SER229 3.8 20.4 1.0
O B:HOH323 3.9 2.8 1.0
CA B:GLU252 3.9 26.8 1.0
SG B:CYS287 4.0 50.0 1.0
O B:HOH359 4.0 28.1 1.0
CB B:SER229 4.1 20.2 1.0
N B:GLU252 4.2 23.4 1.0
C B:MET251 4.3 20.7 1.0
OE1 B:GLU252 4.3 40.7 1.0
O B:MET251 4.4 20.9 1.0
O B:HOH361 4.4 44.2 1.0
CB B:GLU252 4.5 27.6 1.0
CB B:CYS287 4.7 46.9 1.0
CG B:GLU252 4.7 32.4 1.0
N B:ASP253 4.9 29.6 1.0
O B:HOH322 4.9 5.5 1.0
CD B:GLU252 4.9 38.4 1.0
C B:GLU252 5.0 27.4 1.0

Mercury binding site 4 out of 8 in 3h90

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Mercury binding site 4 out of 8 in the Structural Basis For the Autoregulation of the Zinc Transporter Yiip


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 4 of Structural Basis For the Autoregulation of the Zinc Transporter Yiip within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg4

b:80.1
occ:1.00
SG B:CYS127 3.0 51.3 1.0
CB B:CYS127 3.1 49.9 1.0
CA B:CYS127 3.5 49.1 1.0
CD1 B:LEU23 4.2 59.0 1.0
CD1 B:ILE26 4.3 82.3 1.0
CD2 B:LEU23 4.3 57.7 1.0
CG B:LEU23 4.4 58.5 1.0
N B:CYS127 4.4 50.0 1.0
C B:CYS127 4.5 47.4 1.0
O B:CYS127 4.7 47.4 1.0
CD1 B:ILE130 4.9 45.0 1.0

Mercury binding site 5 out of 8 in 3h90

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Mercury binding site 5 out of 8 in the Structural Basis For the Autoregulation of the Zinc Transporter Yiip


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 5 of Structural Basis For the Autoregulation of the Zinc Transporter Yiip within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Hg5

b:92.0
occ:1.00
O C:HOH340 3.0 2.0 1.0
OG C:SER229 3.7 19.5 1.0
CA C:GLU252 3.8 30.2 1.0
CB C:SER229 4.0 20.1 1.0
O C:MET251 4.1 23.1 1.0
SG C:CYS287 4.2 56.7 1.0
N C:GLU252 4.2 25.5 1.0
C C:MET251 4.3 22.3 1.0
CB C:GLU252 4.3 31.3 1.0
O C:HOH342 4.3 48.1 1.0
O C:HOH334 4.4 34.9 1.0
CB C:CYS287 4.5 51.7 1.0
CG C:GLU252 4.6 37.2 1.0
O C:PRO286 4.8 37.5 1.0
O C:GLU250 4.8 15.1 1.0
O C:HOH314 4.8 12.2 1.0
N C:ASP253 4.8 34.9 1.0
O C:HOH335 4.9 53.4 1.0
C C:GLU252 4.9 32.0 1.0

Mercury binding site 6 out of 8 in 3h90

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Mercury binding site 6 out of 8 in the Structural Basis For the Autoregulation of the Zinc Transporter Yiip


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 6 of Structural Basis For the Autoregulation of the Zinc Transporter Yiip within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Hg6

b:0.4
occ:1.00
CB C:CYS127 2.7 67.7 1.0
CA C:CYS127 3.6 66.6 1.0
O C:HOH328 3.7 31.0 1.0
SG C:CYS127 4.0 69.5 1.0
CD1 C:ILE26 4.0 0.8 1.0
CD2 C:LEU23 4.4 81.1 1.0
CD1 C:LEU23 4.4 75.3 1.0
N C:CYS127 4.6 68.0 1.0
C C:CYS127 4.7 64.0 1.0
O C:CYS127 4.7 63.3 1.0
CG1 C:ILE26 4.8 0.8 1.0
CG1 C:ILE130 4.9 60.1 1.0
CG C:LEU23 5.0 77.6 1.0

Mercury binding site 7 out of 8 in 3h90

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Mercury binding site 7 out of 8 in the Structural Basis For the Autoregulation of the Zinc Transporter Yiip


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 7 of Structural Basis For the Autoregulation of the Zinc Transporter Yiip within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Hg7

b:92.4
occ:1.00
O D:HOH325 3.3 29.3 1.0
OG D:SER229 3.6 17.6 1.0
O D:HOH321 3.8 2.0 1.0
O D:HOH323 3.8 58.9 1.0
CB D:SER229 4.0 17.2 1.0
CA D:GLU252 4.0 23.5 1.0
N D:GLU252 4.2 20.4 1.0
OE1 D:GLU252 4.3 36.9 1.0
C D:MET251 4.4 18.0 1.0
O D:HOH322 4.4 53.2 1.0
SG D:CYS287 4.4 46.6 1.0
O D:MET251 4.4 18.5 1.0
O D:HOH320 4.4 21.2 1.0
CB D:GLU252 4.5 24.2 1.0
CG D:GLU252 4.8 28.8 1.0
CD D:GLU252 4.9 34.7 1.0
O D:HOH349 5.0 38.2 1.0
CB D:CYS287 5.0 43.4 1.0

Mercury binding site 8 out of 8 in 3h90

Go back to Mercury Binding Sites List in 3h90
Mercury binding site 8 out of 8 in the Structural Basis For the Autoregulation of the Zinc Transporter Yiip


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 8 of Structural Basis For the Autoregulation of the Zinc Transporter Yiip within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Hg291

b:81.3
occ:1.00
SG D:CYS127 3.4 54.4 1.0
CB D:CYS127 3.4 53.7 1.0
CA D:CYS127 3.5 53.9 1.0
CD1 D:LEU23 4.1 73.2 1.0
CD1 D:ILE130 4.2 49.7 1.0
O D:CYS127 4.4 52.5 1.0
N D:CYS127 4.4 55.5 1.0
C D:CYS127 4.5 52.7 1.0
CG D:LEU23 4.5 70.6 1.0
CD2 D:LEU23 4.6 67.4 1.0
CD1 D:ILE26 4.9 99.1 1.0

Reference:

M.Lu, J.Chai, D.Fu. Structural Basis For Autoregulation of the Zinc Transporter Yiip. Nat.Struct.Mol.Biol. V. 16 1063 2009.
ISSN: ISSN 1545-9993
PubMed: 19749753
DOI: 10.1038/NSMB.1662
Page generated: Wed Oct 28 18:42:37 2020

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