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Mercury in PDB 3kp9: Structure of A Bacterial Homolog of Vitamin K Epoxide Reductase

Enzymatic activity of Structure of A Bacterial Homolog of Vitamin K Epoxide Reductase

All present enzymatic activity of Structure of A Bacterial Homolog of Vitamin K Epoxide Reductase:
1.1.4.2;

Protein crystallography data

The structure of Structure of A Bacterial Homolog of Vitamin K Epoxide Reductase, PDB code: 3kp9 was solved by W.Li, S.Schulman, R.J.Dutton, D.Boyd, J.Beckwith, T.A.Rapoport, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.83 / 3.60
Space group P 61
Cell size a, b, c (Å), α, β, γ (°) 136.942, 136.942, 68.480, 90.00, 90.00, 120.00
R / Rfree (%) 25.1 / 30.5

Mercury Binding Sites:

The binding sites of Mercury atom in the Structure of A Bacterial Homolog of Vitamin K Epoxide Reductase (pdb code 3kp9). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 2 binding sites of Mercury where determined in the Structure of A Bacterial Homolog of Vitamin K Epoxide Reductase, PDB code: 3kp9:
Jump to Mercury binding site number: 1; 2;

Mercury binding site 1 out of 2 in 3kp9

Go back to Mercury Binding Sites List in 3kp9
Mercury binding site 1 out of 2 in the Structure of A Bacterial Homolog of Vitamin K Epoxide Reductase


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Structure of A Bacterial Homolog of Vitamin K Epoxide Reductase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg601

b:59.4
occ:0.20
SG A:CYS212 1.8 49.9 1.0
O A:CYS212 2.7 56.0 1.0
OH A:TYR228 2.9 62.7 1.0
CZ A:TYR228 3.4 62.1 1.0
C A:CYS212 3.4 56.0 1.0
CB A:CYS212 3.4 54.0 1.0
CE1 A:TYR228 3.9 61.7 1.0
CA A:CYS212 4.0 54.6 1.0
O A:ALA206 4.0 58.0 1.0
CE2 A:TYR228 4.0 62.5 1.0
N A:GLN213 4.2 57.4 1.0
CA A:TYR207 4.3 56.9 1.0
CE A:MET203 4.3 60.9 1.0
C A:ALA206 4.5 57.7 1.0
OE1 A:GLN213 4.6 63.4 1.0
N A:TYR207 4.6 57.3 1.0
CA A:GLN213 4.7 58.7 1.0
CB A:LYS216 4.7 60.0 1.0
CD1 A:TYR228 4.8 61.7 1.0
CD2 A:TYR228 4.9 62.2 1.0

Mercury binding site 2 out of 2 in 3kp9

Go back to Mercury Binding Sites List in 3kp9
Mercury binding site 2 out of 2 in the Structure of A Bacterial Homolog of Vitamin K Epoxide Reductase


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of Structure of A Bacterial Homolog of Vitamin K Epoxide Reductase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg602

b:50.8
occ:0.10
ND1 A:HIS195 2.0 63.2 1.0
CE1 A:HIS195 2.6 63.0 1.0
CG A:HIS195 3.3 63.1 1.0
NE2 A:HIS195 3.9 63.0 1.0
CB A:HIS195 3.9 62.9 1.0
CD2 A:HIS195 4.2 62.6 1.0
CA A:HIS195 4.3 62.7 1.0
CG A:GLN198 4.9 63.5 1.0
CD1 A:TYR277 5.0 50.6 1.0
CB A:GLN198 5.0 63.2 1.0

Reference:

W.Li, S.Schulman, R.J.Dutton, D.Boyd, J.Beckwith, T.A.Rapoport. Structure of A Bacterial Homologue of Vitamin K Epoxide Reductase. Nature V. 463 507 2010.
ISSN: ISSN 0028-0836
PubMed: 20110994
DOI: 10.1038/NATURE08720
Page generated: Wed Oct 28 18:42:46 2020

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