Mercury in PDB 3ldb: Structure of JMJD6 Complexd with Alpha-Ketoglutarate and Fab Fragment.

The structure of Structure of JMJD6 Complexd with Alpha-Ketoglutarate and Fab Fragment., PDB code: 3ldb was solved by X.Hong, J.Zang, J.White, J.W.Kappler, C.Wang, G.Zhang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.28 / 2.70
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	138.381, 138.381, 183.622, 90.00, 90.00, 90.00
R / Rfree (%)	25 / 28.5

The structure of Structure of JMJD6 Complexd with Alpha-Ketoglutarate and Fab Fragment. also contains other interesting chemical elements:

Iron

(Fe)

1 atom

The binding sites of Mercury atom in the Structure of JMJD6 Complexd with Alpha-Ketoglutarate and Fab Fragment. (pdb code 3ldb). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 2 binding sites of Mercury where determined in the Structure of JMJD6 Complexd with Alpha-Ketoglutarate and Fab Fragment., PDB code: 3ldb:
Jump to Mercury binding site number: 1; 2;

Mercury binding site 1 out of 2 in the Structure of JMJD6 Complexd with Alpha-Ketoglutarate and Fab Fragment.


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Structure of JMJD6 Complexd with Alpha-Ketoglutarate and Fab Fragment. within 5.0Å range: probe atom residue distance (Å) B Occ A:Hg352 b:98.2 occ:0.80 SG A:CYS207 2.9 63.0 1.0 CB A:CYS207 2.9 60.6 1.0 O A:TRP206 3.6 58.2 1.0 C A:TRP206 3.7 58.8 1.0 N A:CYS207 3.7 58.8 1.0 CA A:CYS207 3.8 59.0 1.0 CZ3 A:TRP235 3.9 47.4 1.0 CG A:ARG205 4.3 61.9 1.0 CG2 A:VAL274 4.3 63.6 1.0 CD1 A:TYR240 4.4 55.4 1.0 CD1 A:PHE236 4.4 67.8 1.0 CA A:TRP206 4.5 57.7 1.0 NE A:ARG205 4.5 66.7 1.0 O A:VAL274 4.6 65.3 1.0 CD A:ARG205 4.6 61.1 1.0 CE3 A:TRP235 4.6 49.5 1.0 CE1 A:TYR240 4.6 57.2 1.0 N A:TRP206 4.7 59.3 1.0 CH2 A:TRP235 4.7 48.8 1.0 CE1 A:PHE236 4.8 66.4 1.0 O A:ARG205 4.9 59.6 1.0 C A:ARG205 4.9 59.4 1.0

Mercury binding site 2 out of 2 in the Structure of JMJD6 Complexd with Alpha-Ketoglutarate and Fab Fragment.


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of Structure of JMJD6 Complexd with Alpha-Ketoglutarate and Fab Fragment. within 5.0Å range: probe atom residue distance (Å) B Occ A:Hg353 b:0.1 occ:0.80 SG A:CYS101 2.7 84.7 1.0 SD A:MET112 3.5 74.8 1.0 CB A:CYS101 3.6 82.1 1.0 CG A:MET112 3.9 78.7 1.0 CD1 A:LEU130 4.0 66.0 1.0 CD1 A:TYR117 4.1 80.5 1.0 CB A:ALA12 4.1 97.2 1.0 CE A:MET112 4.3 71.3 1.0 CE1 A:TYR117 4.3 79.5 1.0 CB A:LEU130 4.3 67.6 1.0 O A:CYS101 4.8 82.4 1.0 CG A:LEU130 4.8 67.7 1.0

X.Hong, J.Zang, J.White, C.Wang, C.H.Pan, R.Zhao, R.C.Murphy, S.Dai, P.Henson, J.W.Kappler, J.Hagman, G.Zhang. Interaction of JMJD6 with Single-Stranded Rna. Proc.Natl.Acad.Sci.Usa V. 107 14568 2010.
ISSN: ISSN 0027-8424
PubMed: 20679243
DOI: 10.1073/PNAS.1008832107