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  Mercury
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    PDB 12ca-1dr4
    PDB 1dr5-1ht3
    PDB 1hzx-1mms
    PDB 1moo-1rhy
    PDB 1rnr-1zfk
    PDB 1zfq-2geh
    PDB 2gv9-2wcd
    PDB 2wiu-3k34
    PDB 3k4o-9ca2
      3k4o
      3k7k
      3kbc
      3kbk
      3kbu
      3kp9
      3kwa
      3ld8
      3ldb
      3ldi
      3lhr
      3lk1
      3m1j
      3m1k
      3mnu
      3mqi
      3myz
      3oax
      3pcy
      3qm0
      3rj7
      3rx6
      3t5u
      3t5z
      3v5g
      3v7x
      3vbd
      3znb
      3zzf
      4ac9
      4ca2
      4e3d
      4e3f
      4e3g
      4e3h
      4e49
      4e4a
      4fj4
      4fl7
      4fyf
      5ca2
      6ca2
      7ca2
      8ca2
      9ca2

Mercury in the structure of Human Early B-Cell Factor 1 (EBF1) Ipt/Tig Domain (pdb 3mqi)






The binding sites of Mercury atom in the structure of Human Early B-Cell Factor 1 (EBF1) Ipt/Tig Domain (pdb code 3mqi). This binding sites where shown with 5.0 Angstroms radius around Mercury atom.
The 3mqi structure was solved by M.I.SIPONEN, L.LEHTIO, C.H.ARROWSMITH, C.BOUNTRA, R.COLLINS, A.M.EDWARDS, S.FLODIN, A.FLORES, S.GRASLUND, M.HAMMARSTROM, I.JOHANSSON, T.KARLBERG, T.KOTENYOVA, M.MOCHE, P.NORDLUND, T.NYMAN, C.PERSSON, H.SCHUELER, P.SCHUTZ, L.SVENSSON, A.G.THORSELL, L.TRESAUGUES, S.VAN DEN BERG, E.WAHLBERG, J.WEIGELT, M.WELIN, M.WISNIEWSKA, H.BERGLUND, STRUCTURALGENOMICS CONSORTIUM (SGC), with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)28.5-2.3
Space groupC121
a (A)86.291
b (A)57.073
c (A)69.140
alpha (°)90.00
beta (°)93.17
gamma (°)90.00
Rfactor (%)23.3
Rfree (%)27.3


Mercury Binding Sites:

Mercury binding site 1 out of 6 in 3mqi


Mercury binding site 1 out of 6 in 3mqi
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stereopicture of Mercury binding site 1 out of 6 in 3mqi
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Mercury in the PDB 3mqi. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Mercury atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Gln333, A: Phe334, A: Cys335, A: Emc1, A: Hoh73, A: Hoh94,

conact list:


AtomAtomDistance (A)
HgNE2 A:Gln3334.78
HgCB A:Gln3334.50
HgCD A:Gln3334.64
HgC A:Gln3334.99
HgCG A:Gln3334.56
HgO A:Phe3343.34
HgN A:Phe3344.96
HgC A:Phe3343.90
HgN A:Cys3354.08
HgCB A:Cys3353.34
HgSG A:Cys3352.55
HgCA A:Cys3353.65
HgHG A:Emc10.00
HgC2 A:Emc13.25
HgC1 A:Emc12.37
HgO A:Hoh734.80
HgO A:Hoh944.91

interactive model:


Mercury binding site 2 out of 6 in 3mqi


Mercury binding site 2 out of 6 in 3mqi
Click to enlarge
stereopicture of Mercury binding site 2 out of 6 in 3mqi
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Mercury in the PDB 3mqi. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Mercury atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Cys263, A: Ile264, A: Lys265, A: Asp285, A: Emc2,

conact list:


AtomAtomDistance (A)
HgO A:Cys2634.03
HgCB A:Cys2633.07
HgSG A:Cys2632.29
HgC A:Cys2633.86
HgCA A:Cys2634.03
HgO A:Ile2644.08
HgN A:Ile2644.23
HgC A:Ile2644.16
HgCA A:Ile2644.77
HgN A:Lys2654.37
HgCB A:Lys2654.87
HgCA A:Lys2654.66
HgN A:Asp2854.60
HgCB A:Asp2854.50
HgOD2 A:Asp2853.48
HgCG A:Asp2854.18
HgHG A:Emc20.00
HgC2 A:Emc23.25
HgC1 A:Emc22.38

interactive model:


Mercury binding site 3 out of 6 in 3mqi


Mercury binding site 3 out of 6 in 3mqi
Click to enlarge
stereopicture of Mercury binding site 3 out of 6 in 3mqi
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Mercury in the PDB 3mqi. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Mercury atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Cys263, B: Ile264, B: Lys265, B: Gly284, B: Asp285, B: Emc4,

conact list:


AtomAtomDistance (A)
HgO B:Cys2633.86
HgN B:Cys2634.96
HgCB B:Cys2633.33
HgSG B:Cys2632.67
HgC B:Cys2633.93
HgCA B:Cys2634.22
HgO B:Ile2644.20
HgN B:Ile2644.43
HgC B:Ile2644.35
HgCA B:Ile2644.98
HgN B:Lys2654.55
HgCB B:Lys2654.87
HgCA B:Lys2654.84
HgCA B:Gly2844.96
HgN B:Asp2854.65
HgCB B:Asp2854.52
HgOD2 B:Asp2853.53
HgCG B:Asp2854.43
HgHG B:Emc40.00
HgC2 B:Emc43.21
HgC1 B:Emc42.37

interactive model:


Mercury binding site 4 out of 6 in 3mqi


Mercury binding site 4 out of 6 in 3mqi
Click to enlarge
stereopicture of Mercury binding site 4 out of 6 in 3mqi
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Mercury in the PDB 3mqi. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Mercury atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Cys335, B: Lys336, B: Gly337, B: Emc5,

conact list:


AtomAtomDistance (A)
HgO B:Cys3353.72
HgCB B:Cys3352.98
HgSG B:Cys3352.82
HgC B:Cys3353.62
HgCA B:Cys3353.72
HgN B:Lys3364.18
HgC B:Lys3364.95
HgCA B:Lys3364.89
HgO B:Gly3373.72
HgN B:Gly3374.72
HgC B:Gly3374.83
HgHG B:Emc50.00
HgC2 B:Emc53.24
HgC1 B:Emc52.37

interactive model:


Mercury binding site 5 out of 6 in 3mqi


Mercury binding site 5 out of 6 in 3mqi
Click to enlarge
stereopicture of Mercury binding site 5 out of 6 in 3mqi
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 5 of Mercury in the PDB 3mqi. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Mercury atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: C: Cys335, C: Lys336, C: Gly337, C: Emc3,

conact list:


AtomAtomDistance (A)
HgO C:Cys3354.45
HgCB C:Cys3353.30
HgSG C:Cys3352.35
HgC C:Cys3354.13
HgCA C:Cys3354.06
HgN C:Lys3364.51
HgO C:Gly3374.53
HgHG C:Emc30.00
HgC2 C:Emc33.22
HgC1 C:Emc32.37

interactive model:


Mercury binding site 6 out of 6 in 3mqi


Mercury binding site 6 out of 6 in 3mqi
Click to enlarge
stereopicture of Mercury binding site 6 out of 6 in 3mqi
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 6 of Mercury in the PDB 3mqi. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Mercury atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: C: Cys263, C: Ile264, C: Lys265, C: Asp285, C: Lys336, C: Emc6,

conact list:


AtomAtomDistance (A)
HgO C:Cys2633.92
HgCB C:Cys2633.50
HgSG C:Cys2632.55
HgC C:Cys2634.09
HgCA C:Cys2634.39
HgO C:Ile2644.26
HgN C:Ile2644.64
HgC C:Ile2644.45
HgN C:Lys2654.59
HgCB C:Lys2654.98
HgCA C:Lys2654.86
HgN C:Asp2854.79
HgCB C:Asp2854.61
HgOD2 C:Asp2853.93
HgCG C:Asp2854.75
HgNZ C:Lys3364.01
HgHG C:Emc60.00
HgC2 C:Emc63.23
HgC1 C:Emc62.37

interactive model:




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