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Mercury in PDB 3v8f: Crystal Structure of Crosslinked Gltph V216C-M385C Mutant

Protein crystallography data

The structure of Crystal Structure of Crosslinked Gltph V216C-M385C Mutant, PDB code: 3v8f was solved by G.Verdon, O.Boudker, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 3.80
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 124.300, 199.810, 111.251, 90.00, 117.08, 90.00
R / Rfree (%) 24.3 / 25.5

Other elements in 3v8f:

The structure of Crystal Structure of Crosslinked Gltph V216C-M385C Mutant also contains other interesting chemical elements:

Sodium (Na) 6 atoms

Mercury Binding Sites:

The binding sites of Mercury atom in the Crystal Structure of Crosslinked Gltph V216C-M385C Mutant (pdb code 3v8f). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 3 binding sites of Mercury where determined in the Crystal Structure of Crosslinked Gltph V216C-M385C Mutant, PDB code: 3v8f:
Jump to Mercury binding site number: 1; 2; 3;

Mercury binding site 1 out of 3 in 3v8f

Go back to Mercury Binding Sites List in 3v8f
Mercury binding site 1 out of 3 in the Crystal Structure of Crosslinked Gltph V216C-M385C Mutant


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Crystal Structure of Crosslinked Gltph V216C-M385C Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg904

b:0.2
occ:0.25
SG A:CYS216 2.3 0.4 1.0
SG A:CYS385 2.7 0.5 1.0
CB A:CYS216 2.9 0.1 1.0
CB A:CYS385 3.2 0.5 1.0
CA A:CYS216 3.6 0.7 1.0
CG A:GLN220 4.0 0.1 1.0
CG2 A:VAL224 4.0 1.0 1.0
CA A:CYS385 4.2 0.1 1.0
C A:CYS216 4.6 0.2 1.0
N A:CYS216 4.6 0.2 1.0
O A:CYS216 4.7 0.1 1.0
CB A:GLN220 4.8 0.1 1.0
CD1 A:ILE113 4.9 0.8 1.0
CB A:VAL224 4.9 1.0 1.0

Mercury binding site 2 out of 3 in 3v8f

Go back to Mercury Binding Sites List in 3v8f
Mercury binding site 2 out of 3 in the Crystal Structure of Crosslinked Gltph V216C-M385C Mutant


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of Crystal Structure of Crosslinked Gltph V216C-M385C Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg904

b:0.2
occ:0.75
SG B:CYS216 2.3 0.4 1.0
SG B:CYS385 2.6 0.6 1.0
CB B:CYS216 3.1 0.2 1.0
CB B:CYS385 3.2 0.1 1.0
CA B:CYS216 3.7 0.2 1.0
CA B:CYS385 4.0 0.2 1.0
CG B:GLN220 4.1 0.5 1.0
CG2 B:VAL224 4.3 0.6 1.0
N B:CYS216 4.7 0.9 1.0
C B:CYS216 4.8 0.3 1.0
CB B:GLN220 4.9 0.0 1.0
O B:CYS216 4.9 0.9 1.0
N B:CYS385 5.0 0.9 1.0
C B:CYS385 5.0 0.1 1.0

Mercury binding site 3 out of 3 in 3v8f

Go back to Mercury Binding Sites List in 3v8f
Mercury binding site 3 out of 3 in the Crystal Structure of Crosslinked Gltph V216C-M385C Mutant


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 3 of Crystal Structure of Crosslinked Gltph V216C-M385C Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Hg904

b:0.1
occ:0.75
SG C:CYS216 2.3 0.1 1.0
SG C:CYS385 2.5 0.1 1.0
CB C:CYS385 3.0 0.1 1.0
CB C:CYS216 3.2 0.7 1.0
CA C:CYS216 3.8 0.0 1.0
CA C:CYS385 3.9 0.2 1.0
CG2 C:VAL224 4.1 0.6 1.0
CG C:GLN220 4.2 0.6 1.0
N C:CYS216 4.8 0.2 1.0
CD1 C:ILE113 4.9 0.0 1.0
C C:CYS216 4.9 0.6 1.0
C C:CYS385 4.9 0.3 1.0
N C:CYS385 4.9 0.1 1.0
CB C:GLN220 5.0 0.3 1.0
O C:CYS216 5.0 0.8 1.0

Reference:

G.Verdon, O.Boudker. Crystal Structure of An Asymmetric Trimer of A Bacterial Glutamate Transporter Homolog. Nat.Struct.Mol.Biol. V. 19 355 2012.
ISSN: ISSN 1545-9993
PubMed: 22343718
DOI: 10.1038/NSMB.2233
Page generated: Sun Dec 13 19:10:29 2020

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