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Mercury in PDB 3vus: Escherichia Coli Pgab N-Terminal Domain

Protein crystallography data

The structure of Escherichia Coli Pgab N-Terminal Domain, PDB code: 3vus was solved by T.Nishiyama, H.Noguchi, H.Yoshida, S.-Y.Park, J.R.H.Tame, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.00 / 1.65
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 39.559, 53.114, 144.170, 90.00, 95.25, 90.00
R / Rfree (%) 20.5 / 25.6

Other elements in 3vus:

The structure of Escherichia Coli Pgab N-Terminal Domain also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Mercury Binding Sites:

The binding sites of Mercury atom in the Escherichia Coli Pgab N-Terminal Domain (pdb code 3vus). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total only one binding site of Mercury was determined in the Escherichia Coli Pgab N-Terminal Domain, PDB code: 3vus:

Mercury binding site 1 out of 1 in 3vus

Go back to Mercury Binding Sites List in 3vus
Mercury binding site 1 out of 1 in the Escherichia Coli Pgab N-Terminal Domain


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Escherichia Coli Pgab N-Terminal Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg403

b:33.8
occ:0.20
NE2 B:HIS98 2.3 43.5 1.0
CD2 B:HIS98 3.0 47.9 1.0
CE1 B:HIS98 3.4 50.3 1.0
O B:HOH564 3.9 43.7 1.0
CG B:HIS98 4.2 44.4 1.0
ND1 B:HIS98 4.4 46.1 1.0

Reference:

T.Nishiyama, H.Noguchi, H.Yoshida, S.Y.Park, J.R.Tame. The Structure of the Deacetylase Domain of Escherichia Coli Pgab, An Enzyme Required For Biofilm Formation: A Circularly Permuted Member of the Carbohydrate Esterase 4 Family Acta Crystallogr.,Sect.D V. 69 44 2013.
ISSN: ISSN 0907-4449
PubMed: 23275162
DOI: 10.1107/S0907444912042059
Page generated: Sun Dec 13 19:10:28 2020

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