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Mercury in PDB 3wa8: Crystal Structure of M. Ruber Casb

Protein crystallography data

The structure of Crystal Structure of M. Ruber Casb, PDB code: 3wa8 was solved by Y.A.Yuan, Z.Yuan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.13 / 2.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 71.823, 75.383, 112.671, 90.00, 90.00, 90.00
R / Rfree (%) 20.8 / 25.9

Mercury Binding Sites:

The binding sites of Mercury atom in the Crystal Structure of M. Ruber Casb (pdb code 3wa8). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 4 binding sites of Mercury where determined in the Crystal Structure of M. Ruber Casb, PDB code: 3wa8:
Jump to Mercury binding site number: 1; 2; 3; 4;

Mercury binding site 1 out of 4 in 3wa8

Go back to Mercury Binding Sites List in 3wa8
Mercury binding site 1 out of 4 in the Crystal Structure of M. Ruber Casb


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Crystal Structure of M. Ruber Casb within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg301

b:93.8
occ:1.00
SG A:CYS61 2.8 48.6 1.0
CH2 A:TRP57 3.2 62.2 1.0
CZ2 A:TRP57 3.4 61.3 1.0
CA A:CYS61 3.7 44.3 1.0
CB A:CYS61 3.7 46.3 1.0
CZ3 A:TRP57 3.7 63.9 1.0
CD2 A:LEU64 3.9 44.5 1.0
N A:CYS61 4.0 46.2 1.0
CE2 A:TRP57 4.0 64.0 1.0
CB A:LEU166 4.0 41.5 1.0
CD1 A:LEU166 4.0 38.5 1.0
CG2 A:ILE60 4.1 45.5 1.0
CD2 A:LEU138 4.3 50.5 1.0
CE3 A:TRP57 4.4 65.8 1.0
CG A:LEU166 4.4 40.1 1.0
C A:ILE60 4.5 45.6 1.0
CD2 A:LEU166 4.5 40.7 1.0
CD2 A:TRP57 4.5 67.3 1.0
O A:ILE60 4.6 43.6 1.0
CG A:LEU138 4.8 47.9 1.0
CB A:ILE60 4.9 48.7 1.0
NE1 A:TRP57 4.9 65.4 1.0
CB A:LEU64 4.9 43.3 1.0
O A:LEU166 4.9 48.9 1.0
C A:CYS61 4.9 43.6 1.0

Mercury binding site 2 out of 4 in 3wa8

Go back to Mercury Binding Sites List in 3wa8
Mercury binding site 2 out of 4 in the Crystal Structure of M. Ruber Casb


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of Crystal Structure of M. Ruber Casb within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg302

b:0.9
occ:1.00
N A:TRP159 3.7 44.6 1.0
N A:SER160 3.8 46.0 1.0
NH2 A:ARG16 3.8 51.7 1.0
NH1 A:ARG16 4.2 58.5 1.0
OG A:SER160 4.2 54.7 1.0
C A:TYR158 4.2 45.8 1.0
NH2 A:ARG156 4.2 77.0 1.0
CA A:TYR158 4.3 48.3 1.0
CG1 A:VAL12 4.3 53.1 1.0
CA A:TRP159 4.4 42.5 1.0
CB A:TRP159 4.4 41.6 1.0
CZ A:ARG16 4.5 55.7 1.0
CB A:SER160 4.5 51.8 1.0
C A:TRP159 4.6 43.5 1.0
CD1 A:TRP159 4.7 43.3 1.0
CB A:TYR158 4.7 49.8 1.0
CA A:SER160 4.7 48.5 1.0
CG A:TRP159 5.0 41.8 1.0

Mercury binding site 3 out of 4 in 3wa8

Go back to Mercury Binding Sites List in 3wa8
Mercury binding site 3 out of 4 in the Crystal Structure of M. Ruber Casb


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 3 of Crystal Structure of M. Ruber Casb within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg301

b:0.2
occ:1.00
SG B:CYS61 2.9 57.5 1.0
CH2 B:TRP57 3.3 64.4 1.0
CZ2 B:TRP57 3.3 62.8 1.0
CB B:CYS61 3.6 49.6 1.0
CA B:CYS61 3.6 48.7 1.0
CZ3 B:TRP57 3.9 67.7 1.0
CD2 B:LEU64 3.9 43.8 1.0
CE2 B:TRP57 4.0 66.8 1.0
N B:CYS61 4.0 50.4 1.0
CB B:LEU166 4.1 38.9 1.0
CG2 B:ILE60 4.2 52.5 1.0
CD1 B:LEU166 4.2 40.8 1.0
C B:ILE60 4.4 50.6 1.0
CD2 B:LEU166 4.4 37.6 1.0
CE3 B:TRP57 4.5 70.4 1.0
CG B:LEU166 4.5 39.2 1.0
CD2 B:LEU138 4.5 55.0 1.0
CD2 B:TRP57 4.5 70.3 1.0
O B:ILE60 4.6 48.3 1.0
NE1 B:TRP57 4.8 67.5 1.0
CB B:LEU64 4.9 44.3 1.0
CB B:ILE60 4.9 56.0 1.0
O B:TRP57 4.9 67.1 1.0
C B:CYS61 5.0 47.4 1.0
CG B:LEU138 5.0 52.9 1.0

Mercury binding site 4 out of 4 in 3wa8

Go back to Mercury Binding Sites List in 3wa8
Mercury binding site 4 out of 4 in the Crystal Structure of M. Ruber Casb


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 4 of Crystal Structure of M. Ruber Casb within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg302

b:0.1
occ:1.00
N B:TRP159 3.7 47.7 1.0
NH1 B:ARG16 3.8 58.1 1.0
N B:SER160 3.9 49.2 1.0
NH2 B:ARG156 4.0 77.1 1.0
OG B:SER160 4.1 56.4 1.0
NH2 B:ARG16 4.2 57.8 1.0
CB B:TRP159 4.2 44.9 1.0
CA B:TYR158 4.3 50.4 1.0
C B:TYR158 4.3 47.9 1.0
CA B:TRP159 4.4 45.0 1.0
CD1 B:TRP159 4.4 47.0 1.0
CZ B:ARG16 4.5 59.1 1.0
CG1 B:VAL12 4.5 52.5 1.0
CB B:SER160 4.6 54.3 1.0
C B:TRP159 4.7 45.7 1.0
CG B:TRP159 4.7 45.6 1.0
CB B:TYR158 4.8 51.5 1.0
OE2 B:GLU161 4.8 68.9 1.0
O B:ILE157 4.9 53.2 1.0
CA B:SER160 4.9 51.1 1.0

Reference:

Y.A.Yuan, Z.Yuan. Structural Insights Into Crrna G-Rich Sequence Binding and R-Loop Formation Facilitated By Meiothermus Ruber Casb To Be Published.
Page generated: Sun Dec 13 19:10:30 2020

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