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Mercury in PDB 3wee: Structure of the Full-Length Yeast ARP7-ARP9 Heterodimer

Protein crystallography data

The structure of Structure of the Full-Length Yeast ARP7-ARP9 Heterodimer, PDB code: 3wee was solved by J.Lobsiger, T.J.Richmond, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.73 / 3.10
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 103.774, 103.774, 184.451, 90.00, 90.00, 120.00
R / Rfree (%) 19.9 / 22

Mercury Binding Sites:

The binding sites of Mercury atom in the Structure of the Full-Length Yeast ARP7-ARP9 Heterodimer (pdb code 3wee). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 7 binding sites of Mercury where determined in the Structure of the Full-Length Yeast ARP7-ARP9 Heterodimer, PDB code: 3wee:
Jump to Mercury binding site number: 1; 2; 3; 4; 5; 6; 7;

Mercury binding site 1 out of 7 in 3wee

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Mercury binding site 1 out of 7 in the Structure of the Full-Length Yeast ARP7-ARP9 Heterodimer


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Structure of the Full-Length Yeast ARP7-ARP9 Heterodimer within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg159

b:63.6
occ:0.80
 HG A:CMH159 0.0 63.6 0.8
CM A:CMH159 2.4 63.4 0.7
SG A:CMH159 2.6 64.3 1.0
CB A:CMH159 3.4 65.2 1.0
CD2 A:LEU156 3.6 59.8 1.0
OG1 A:THR150 3.8 53.3 1.0
CG1 A:ILE334 3.9 36.7 1.0
CG1 A:ILE161 3.9 34.3 1.0
CD1 A:ILE161 4.0 34.0 1.0
CD1 A:ILE174 4.3 34.4 1.0
CA A:THR150 4.4 54.5 1.0
CD1 A:ILE334 4.6 36.9 1.0
N A:THR150 4.7 53.9 1.0
CB A:THR150 4.7 54.0 1.0
CA A:CMH159 4.8 65.4 1.0
CB A:ILE334 4.9 36.7 1.0
C A:CMH159 5.0 64.4 1.0

Mercury binding site 2 out of 7 in 3wee

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Mercury binding site 2 out of 7 in the Structure of the Full-Length Yeast ARP7-ARP9 Heterodimer


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of Structure of the Full-Length Yeast ARP7-ARP9 Heterodimer within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg302

b:68.3
occ:0.96
 HG A:CMH302 0.0 68.3 1.0
CM A:CMH302 2.3 70.6 0.8
SG A:CMH302 2.6 66.1 1.0
CZ A:PHE219 3.3 46.5 1.0
CB A:CMH302 3.4 65.5 1.0
CE2 A:PHE219 3.5 45.7 1.0
CG2 A:VAL221 3.5 45.0 1.0
N A:CMH302 3.7 67.2 1.0
O A:GLN300 3.9 50.3 1.0
C A:GLN300 4.1 49.9 1.0
CE1 A:PHE219 4.1 48.0 1.0
CA A:CMH302 4.2 65.9 1.0
C A:GLY301 4.3 44.2 1.0
N A:GLY301 4.4 46.4 1.0
CD2 A:PHE219 4.4 46.6 1.0
CA A:GLY301 4.5 45.8 1.0
N A:VAL221 4.7 47.7 1.0
CB A:VAL221 4.8 46.2 1.0
CG2 A:ILE342 4.8 43.5 1.0
CG2 A:ILE194 4.8 44.3 1.0
N A:GLN300 4.9 51.6 1.0
O A:PHE299 4.9 54.9 1.0
CA A:GLN300 4.9 50.7 1.0
CA A:VAL221 4.9 47.7 1.0
CD1 A:PHE219 4.9 48.8 1.0
C A:PHE299 4.9 55.9 1.0
C A:GLU220 4.9 52.7 1.0
CG A:PHE219 5.0 48.1 1.0

Mercury binding site 3 out of 7 in 3wee

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Mercury binding site 3 out of 7 in the Structure of the Full-Length Yeast ARP7-ARP9 Heterodimer


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 3 of Structure of the Full-Length Yeast ARP7-ARP9 Heterodimer within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg403

b:85.6
occ:0.51
 HG A:CMH403 0.0 85.6 0.5
CM A:CMH403 2.3 87.3 0.5
SG A:CMH403 2.6 83.8 0.5
O A:GLN402 3.3 50.2 1.0
CB A:CMH403 3.6 82.8 0.5
C A:GLN402 3.6 49.3 1.0
CB A:CMH403 3.6 82.7 0.5
N A:CMH403 3.9 80.6 0.5
N A:CMH403 3.9 80.6 0.5
CA A:CMH403 3.9 81.3 0.5
CA A:CMH403 4.0 81.3 0.5
SG A:CMH403 4.0 82.2 0.5
CD1 A:ILE323 4.4 44.7 1.0
CA A:GLN402 4.5 48.5 1.0
CG1 A:ILE323 4.6 43.5 1.0
N A:GLN402 4.6 49.2 1.0
CG2 A:THR405 4.9 52.0 1.0
CD A:LYS327 5.0 54.7 1.0

Mercury binding site 4 out of 7 in 3wee

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Mercury binding site 4 out of 7 in the Structure of the Full-Length Yeast ARP7-ARP9 Heterodimer


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 4 of Structure of the Full-Length Yeast ARP7-ARP9 Heterodimer within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg403

b:80.1
occ:0.49
 HG A:CMH403 0.0 80.1 0.5
CM A:CMH403 2.3 78.3 0.5
SG A:CMH403 2.6 82.2 0.5
O A:CMH403 3.2 78.6 0.5
O A:CMH403 3.3 78.5 0.5
CB A:CMH403 3.5 82.7 0.5
CB A:CMH403 3.6 82.8 0.5
C A:CMH403 3.7 79.8 0.5
C A:CMH403 3.8 79.8 0.5
CB A:ALA326 3.9 37.7 1.0
CA A:CMH403 4.0 81.3 0.5
SG A:CMH403 4.0 83.8 0.5
CA A:CMH403 4.1 81.3 0.5
N A:CMH403 4.1 80.6 0.5
N A:CMH403 4.1 80.6 0.5
NE2 B:GLN230 4.3 62.3 1.0
NE1 A:TRP330 4.5 36.6 1.0
N A:PRO404 4.6 46.8 1.0
CD1 A:TRP330 4.7 36.7 1.0
O A:ILE323 4.9 41.1 1.0
O A:LEU317 4.9 36.6 1.0
CG1 A:ILE323 4.9 43.5 1.0

Mercury binding site 5 out of 7 in 3wee

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Mercury binding site 5 out of 7 in the Structure of the Full-Length Yeast ARP7-ARP9 Heterodimer


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 5 of Structure of the Full-Length Yeast ARP7-ARP9 Heterodimer within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg7

b:62.6
occ:0.86
 HG B:CMH7 0.0 62.6 0.9
CM B:CMH7 2.3 63.7 1.0
SG B:CMH7 2.6 61.7 1.0
O B:ALA444 3.0 55.0 1.0
N B:CMH7 3.2 60.7 1.0
CB B:CMH7 3.4 60.5 1.0
C B:LYS6 3.5 48.8 1.0
OG B:SER22 3.7 52.9 1.0
CA B:CMH7 3.7 60.5 1.0
C B:ALA444 3.9 54.4 1.0
CA B:LYS6 4.0 49.1 1.0
O B:LYS6 4.1 49.3 1.0
N B:LYS6 4.4 50.1 1.0
CB B:ALA444 4.5 53.7 1.0
CB B:SER22 4.6 52.2 1.0
CA B:ALA444 4.7 54.2 1.0
N B:ASN445 4.7 48.9 1.0
OD1 B:ASN445 4.8 48.0 1.0
CA B:ASN445 4.8 49.0 1.0
O B:ASN4 4.8 78.6 1.0
C B:ARG5 5.0 82.0 1.0

Mercury binding site 6 out of 7 in 3wee

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Mercury binding site 6 out of 7 in the Structure of the Full-Length Yeast ARP7-ARP9 Heterodimer


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 6 of Structure of the Full-Length Yeast ARP7-ARP9 Heterodimer within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg29

b:51.5
occ:0.85
 HG B:CMH29 0.0 51.5 0.8
CM B:CMH29 2.3 51.5 1.0
SG B:CMH29 2.6 51.7 1.0
OE1 B:GLN94 3.0 44.9 1.0
O B:GLN28 3.1 42.0 1.0
CA B:CMH29 3.5 51.0 1.0
CB B:CMH29 3.5 51.4 1.0
C B:GLN28 3.8 42.1 1.0
CD B:GLN94 3.9 45.3 1.0
N B:CMH29 4.0 51.2 1.0
CG B:GLN94 4.3 45.2 1.0
CB B:GLN94 4.5 45.5 1.0
O3 B:CXS501 4.5 35.2 1.0
CG B:GLN28 4.6 42.8 1.0
CA A:HIS182 4.7 42.9 1.0
OE1 B:GLN28 4.7 42.8 1.0
O A:ASP181 4.8 61.4 1.0
C B:CMH29 4.8 50.9 1.0
O A:HIS182 4.8 43.9 1.0
NE2 B:GLN94 4.9 45.9 1.0
N B:ILE30 5.0 41.5 1.0

Mercury binding site 7 out of 7 in 3wee

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Mercury binding site 7 out of 7 in the Structure of the Full-Length Yeast ARP7-ARP9 Heterodimer


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 7 of Structure of the Full-Length Yeast ARP7-ARP9 Heterodimer within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg306

b:60.4
occ:0.89
 HG B:CMH306 0.0 60.4 0.9
CM B:CMH306 2.4 59.4 0.9
SG B:CMH306 2.6 61.9 1.0
O B:MET235 2.8 52.2 1.0
CB B:CMH306 3.4 61.8 1.0
SD B:MET235 3.5 54.7 1.0
C B:MET235 3.6 50.6 1.0
CA B:MET235 3.7 50.3 1.0
CB B:LYS288 3.9 62.4 1.0
CG B:LYS288 4.0 62.5 1.0
CB B:MET235 4.2 51.1 1.0
CE B:MET235 4.2 55.4 1.0
CD1 B:LEU303 4.2 51.5 1.0
CG B:MET235 4.4 52.1 1.0
O B:THR234 4.7 48.9 1.0
CA B:CMH306 4.9 62.6 1.0
N B:LEU236 4.9 49.4 1.0
CD B:LYS288 4.9 62.3 1.0

Reference:

J.Lobsiger, Y.Hunziker, T.J.Richmond. Structure of the Full-Length Yeast ARP7-ARP9 Heterodimer Acta Crystallogr.,Sect.D V. 70 310 2014.
ISSN: ISSN 0907-4449
DOI: 10.1107/S1399004713027417
Page generated: Sun Dec 13 19:10:37 2020

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