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Mercury in PDB 3zfq: Crystal Structure of Product-Like, Processed N-Terminal Protease Npro with Mercury

Protein crystallography data

The structure of Crystal Structure of Product-Like, Processed N-Terminal Protease Npro with Mercury, PDB code: 3zfq was solved by T.Zogg, M.Sponring, S.Schindler, M.Koll, R.Schneider, H.Brandstetter, B.Auer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 2.65
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 41.640, 41.230, 43.210, 90.00, 114.15, 90.00
R / Rfree (%) 20.8 / 27.6

Mercury Binding Sites:

The binding sites of Mercury atom in the Crystal Structure of Product-Like, Processed N-Terminal Protease Npro with Mercury (pdb code 3zfq). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total only one binding site of Mercury was determined in the Crystal Structure of Product-Like, Processed N-Terminal Protease Npro with Mercury, PDB code: 3zfq:

Mercury binding site 1 out of 1 in 3zfq

Go back to Mercury Binding Sites List in 3zfq
Mercury binding site 1 out of 1 in the Crystal Structure of Product-Like, Processed N-Terminal Protease Npro with Mercury


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Crystal Structure of Product-Like, Processed N-Terminal Protease Npro with Mercury within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg1170

b:46.8
occ:1.00
O A:HOH2018 2.3 3.3 1.0
O A:HOH2017 2.8 2.0 1.0
ND1 A:HIS130 2.9 11.4 1.0
O A:HOH2023 3.2 16.8 1.0
CG A:HIS130 3.5 10.9 1.0
CE1 A:HIS130 3.6 11.1 1.0
CB A:HIS130 3.7 10.7 1.0
CG A:ARG120 4.1 9.4 1.0
CA A:HIS130 4.2 10.8 1.0
CE1 A:TYR132 4.4 12.7 1.0
CD A:ARG120 4.4 9.6 1.0
O A:GLY119 4.4 9.2 1.0
NE A:ARG117 4.4 12.5 1.0
CD2 A:HIS130 4.5 10.7 1.0
NE2 A:HIS130 4.5 10.9 1.0
NH2 A:ARG117 4.6 11.8 1.0
C A:GLY119 4.6 9.4 1.0
OH A:TYR132 4.7 13.7 1.0
CZ A:TYR132 4.9 13.0 1.0
N A:MET131 5.0 10.5 1.0
CZ A:ARG117 5.0 12.2 1.0

Reference:

T.Zogg, M.Sponring, S.Schindler, M.Koll, R.Schneider, H.Brandstetter, B.Auer. Crystal Structures of the Viral Protease Npro Imply Distinct Roles For the Catalytic Water in Catalysis Structure V. 21 929 2013.
ISSN: ISSN 0969-2126
PubMed: 23643950
DOI: 10.1016/J.STR.2013.04.003
Page generated: Sun Dec 13 19:10:37 2020

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