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Mercury in PDB 3zn3: N-Terminal Domain of S. Pombe CDC23 Apc Subunit

Protein crystallography data

The structure of N-Terminal Domain of S. Pombe CDC23 Apc Subunit, PDB code: 3zn3 was solved by Z.Zhang, J.Yang, N.Conin, K.Kulkarni, D.Barford, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 154.81 / 1.90
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 56.875, 56.875, 154.814, 90.00, 90.00, 90.00
R / Rfree (%) 20.6 / 25.9

Mercury Binding Sites:

The binding sites of Mercury atom in the N-Terminal Domain of S. Pombe CDC23 Apc Subunit (pdb code 3zn3). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 3 binding sites of Mercury where determined in the N-Terminal Domain of S. Pombe CDC23 Apc Subunit, PDB code: 3zn3:
Jump to Mercury binding site number: 1; 2; 3;

Mercury binding site 1 out of 3 in 3zn3

Go back to Mercury Binding Sites List in 3zn3
Mercury binding site 1 out of 3 in the N-Terminal Domain of S. Pombe CDC23 Apc Subunit


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of N-Terminal Domain of S. Pombe CDC23 Apc Subunit within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg401

b:0.3
occ:0.67
CB A:CYS30 2.1 40.5 1.0
SG A:CYS30 2.5 47.9 0.7
CA A:CYS30 2.7 35.4 1.0
N A:CYS30 3.8 31.0 1.0
C A:CYS30 3.8 32.9 1.0
O A:CYS30 4.0 33.6 1.0
SG A:CYS34 4.4 23.9 0.9
O A:CYS26 4.7 25.1 1.0
N A:ILE31 4.8 30.0 1.0
C A:LYS29 4.8 31.2 1.0

Mercury binding site 2 out of 3 in 3zn3

Go back to Mercury Binding Sites List in 3zn3
Mercury binding site 2 out of 3 in the N-Terminal Domain of S. Pombe CDC23 Apc Subunit


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of N-Terminal Domain of S. Pombe CDC23 Apc Subunit within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg402

b:74.5
occ:0.69
SG A:CYS113 2.5 28.2 0.6
CA A:CYS113 3.3 31.2 1.0
CB A:CYS113 3.5 32.4 1.0
N A:CYS113 3.5 33.7 1.0
C A:ASN112 3.7 38.5 1.0
CG A:GLU87 3.8 32.1 1.0
O A:ASN112 3.9 41.0 1.0
CG2 A:ILE90 3.9 35.0 1.0
CD A:GLU87 4.1 34.7 1.0
OE2 A:GLU87 4.1 37.9 1.0
CB A:ASN112 4.3 40.6 1.0
CG1 A:ILE90 4.4 32.0 1.0
CA A:ASN112 4.4 39.7 1.0
CB A:ILE90 4.6 30.2 1.0
CB A:GLU87 4.6 30.0 1.0
CD1 A:ILE90 4.7 44.0 1.0
C A:CYS113 4.7 33.9 1.0
OE1 A:GLU87 4.8 35.0 1.0
N A:ASN112 4.8 28.7 1.0

Mercury binding site 3 out of 3 in 3zn3

Go back to Mercury Binding Sites List in 3zn3
Mercury binding site 3 out of 3 in the N-Terminal Domain of S. Pombe CDC23 Apc Subunit


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 3 of N-Terminal Domain of S. Pombe CDC23 Apc Subunit within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg403

b:57.9
occ:0.32
SG A:CYS26 2.3 33.2 0.8
CB A:CYS26 3.2 29.1 1.0
CA A:CYS26 4.0 26.0 1.0
NZ A:LYS29 4.2 51.8 1.0
N A:CYS26 4.9 26.9 1.0
C A:CYS26 5.0 24.9 1.0

Reference:

Z.Zhang, L.Chang, J.Yang, N.Conin, K.Kulkarn, D.Barford. The Four Canonical Tpr Subunits of Human Apc/C Form Related Homo-Dimeric Structures and Stack in Parallel to Form A Tpr Suprahelix J.Mol.Biol. V. 425 4236 2013.
ISSN: ISSN 0022-2836
PubMed: 23583778
DOI: 10.1016/J.JMB.2013.04.004
Page generated: Sun Dec 13 19:10:39 2020

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