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Mercury in PDB 4auw: Crystal Structure of the Bzip Homodimeric Mafb in Complex with the C- Mare Binding Site

Protein crystallography data

The structure of Crystal Structure of the Bzip Homodimeric Mafb in Complex with the C- Mare Binding Site, PDB code: 4auw was solved by L.C.Textor, S.Holton, M.Wilmanns, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 85.75 / 2.90
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 94.964, 94.964, 200.111, 90.00, 90.00, 90.00
R / Rfree (%) 25.5 / 29

Mercury Binding Sites:

The binding sites of Mercury atom in the Crystal Structure of the Bzip Homodimeric Mafb in Complex with the C- Mare Binding Site (pdb code 4auw). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 4 binding sites of Mercury where determined in the Crystal Structure of the Bzip Homodimeric Mafb in Complex with the C- Mare Binding Site, PDB code: 4auw:
Jump to Mercury binding site number: 1; 2; 3; 4;

Mercury binding site 1 out of 4 in 4auw

Go back to Mercury Binding Sites List in 4auw
Mercury binding site 1 out of 4 in the Crystal Structure of the Bzip Homodimeric Mafb in Complex with the C- Mare Binding Site


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Crystal Structure of the Bzip Homodimeric Mafb in Complex with the C- Mare Binding Site within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg1299

b:66.1
occ:1.00
SG A:CYS255 2.5 24.7 1.0
OP2 D:DT8 3.0 28.2 1.0
O A:CYS255 3.1 29.1 1.0
NH2 A:ARG259 3.5 28.1 1.0
O5' D:DT8 3.6 28.7 1.0
P D:DT8 3.7 29.8 1.0
C A:CYS255 3.8 29.2 1.0
CZ A:ARG259 3.8 26.3 1.0
CB A:CYS255 3.8 28.3 1.0
CA A:CYS255 3.9 28.7 1.0
OP1 D:DT8 4.0 30.0 1.0
N A:ARG259 4.0 29.9 1.0
CD A:LYS258 4.0 26.7 1.0
CB A:LYS258 4.1 28.4 1.0
NE A:ARG259 4.1 24.9 1.0
CB A:ARG259 4.1 30.2 1.0
CA A:ARG259 4.3 30.4 1.0
NH1 A:ARG259 4.4 27.2 1.0
C3' D:DT8 4.5 26.9 1.0
C A:LYS258 4.6 29.5 1.0
C2' D:DT8 4.6 27.0 1.0
CG A:LYS258 4.7 27.2 1.0
C5' D:DT8 4.8 27.5 1.0
OP2 D:DG9 4.8 27.4 1.0
CG A:ARG259 4.8 29.3 1.0
CA A:LYS258 4.9 29.1 1.0

Mercury binding site 2 out of 4 in 4auw

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Mercury binding site 2 out of 4 in the Crystal Structure of the Bzip Homodimeric Mafb in Complex with the C- Mare Binding Site


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of Crystal Structure of the Bzip Homodimeric Mafb in Complex with the C- Mare Binding Site within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg1298

b:56.2
occ:1.00
SG B:CYS255 2.2 14.8 1.0
O B:CYS255 2.9 19.7 1.0
OP2 C:DT8 3.1 15.8 1.0
CB B:CYS255 3.5 17.8 1.0
CA B:CYS255 3.5 18.3 1.0
C B:CYS255 3.6 19.1 1.0
O5' C:DT8 3.6 15.6 1.0
P C:DT8 3.7 18.1 1.0
NH2 B:ARG259 3.9 33.9 1.0
CZ B:ARG259 4.0 33.9 1.0
OP1 C:DT8 4.0 17.9 1.0
CD B:LYS258 4.2 24.9 1.0
CB B:LYS258 4.2 25.5 1.0
N B:ARG259 4.3 27.6 1.0
CB B:ARG259 4.3 28.2 1.0
NE B:ARG259 4.4 32.7 1.0
NH1 B:ARG259 4.5 36.0 1.0
C3' C:DT8 4.6 16.7 1.0
CG B:LYS258 4.6 24.5 1.0
CA B:ARG259 4.6 28.5 1.0
C2' C:DT8 4.7 15.0 1.0
C5' C:DT8 4.8 14.8 1.0
C B:LYS258 4.8 26.5 1.0
CG B:ARG259 4.8 29.4 1.0
N B:ARG256 4.8 19.4 1.0
N B:CYS255 4.9 18.7 1.0
NE2 B:GLN262 4.9 37.3 1.0

Mercury binding site 3 out of 4 in 4auw

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Mercury binding site 3 out of 4 in the Crystal Structure of the Bzip Homodimeric Mafb in Complex with the C- Mare Binding Site


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 3 of Crystal Structure of the Bzip Homodimeric Mafb in Complex with the C- Mare Binding Site within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Hg1300

b:56.9
occ:1.00
SG E:CYS255 2.3 9.9 1.0
O E:CYS255 2.9 18.9 1.0
OP2 G:DT8 3.2 15.2 1.0
O5' G:DT8 3.5 13.8 1.0
CB E:CYS255 3.5 16.4 1.0
C E:CYS255 3.6 18.3 1.0
CA E:CYS255 3.6 17.2 1.0
NH2 E:ARG259 3.7 34.4 1.0
P G:DT8 3.7 17.3 1.0
CD E:LYS258 3.8 31.2 1.0
NE E:ARG259 4.0 31.3 1.0
CG E:LYS258 4.0 29.1 1.0
CZ E:ARG259 4.1 32.2 1.0
CB E:LYS258 4.1 27.2 1.0
OP1 G:DT8 4.2 17.7 1.0
N E:ARG259 4.2 27.6 1.0
CB E:ARG259 4.4 28.7 1.0
C3' G:DT8 4.5 16.4 1.0
CA E:ARG259 4.6 28.4 1.0
C5' G:DT8 4.6 13.9 1.0
C2' G:DT8 4.7 14.9 1.0
N E:ARG256 4.8 18.5 1.0
C E:LYS258 4.8 27.0 1.0
OP2 G:DG9 4.9 22.9 1.0
CG E:ARG259 4.9 29.8 1.0
CA E:LYS258 5.0 26.7 1.0

Mercury binding site 4 out of 4 in 4auw

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Mercury binding site 4 out of 4 in the Crystal Structure of the Bzip Homodimeric Mafb in Complex with the C- Mare Binding Site


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 4 of Crystal Structure of the Bzip Homodimeric Mafb in Complex with the C- Mare Binding Site within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Hg1299

b:70.7
occ:1.00
SG F:CYS255 2.3 27.4 1.0
O F:CYS255 3.2 33.1 1.0
OP2 H:DT8 3.4 28.4 1.0
O5' H:DT8 3.6 29.8 1.0
CB F:CYS255 3.7 31.4 1.0
P H:DT8 3.7 31.8 1.0
C F:CYS255 3.9 32.7 1.0
OP1 H:DT8 3.9 31.3 1.0
CA F:CYS255 3.9 31.6 1.0
NH2 F:ARG259 4.0 43.5 1.0
CB F:ARG259 4.1 39.1 1.0
CD F:LYS258 4.1 35.1 1.0
NE F:ARG259 4.2 41.4 1.0
CZ F:ARG259 4.2 42.4 1.0
N F:ARG259 4.2 38.4 1.0
CB F:LYS258 4.4 37.1 1.0
CA F:ARG259 4.5 39.1 1.0
C3' H:DT8 4.5 30.6 1.0
CG F:LYS258 4.5 36.2 1.0
C5' H:DT8 4.6 30.6 1.0
OP2 H:DG9 4.7 34.2 1.0
CG F:ARG259 4.7 40.3 1.0
OE1 F:GLN262 4.8 47.1 1.0
NE2 F:GLN262 4.8 44.8 1.0
C2' H:DT8 4.8 29.8 1.0
CE F:LYS258 4.8 34.2 1.0
CD F:GLN262 4.9 45.9 1.0
C F:LYS258 5.0 37.9 1.0

Reference:

L.C.Textor, M.Wilmanns, S.J.Holton. Expression, Purification, Crystallization and Preliminary Crystallographic Analysis of the Mouse Transcription Factor Mafb in Complex with Its Dna-Recognition Motif Cmare Acta Crystallogr Sect F V. 63 657 2007STRUCT Biol Cryst Commun..
PubMed: 17671361
DOI: 10.1107/S1744309107031260
Page generated: Sun Dec 13 19:10:49 2020

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