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Mercury in PDB 4bjj: SFC1-SFC7 Dimerization Module

Protein crystallography data

The structure of SFC1-SFC7 Dimerization Module, PDB code: 4bjj was solved by N.M.I.Taylor, F.Baudin, G.Von Scheven, C.W.Muller, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.290 / 2.40
Space group P 63 2 2
Cell size a, b, c (Å), α, β, γ (°) 85.245, 85.245, 154.108, 90.00, 90.00, 120.00
R / Rfree (%) 18.09 / 22.36

Mercury Binding Sites:

The binding sites of Mercury atom in the SFC1-SFC7 Dimerization Module (pdb code 4bjj). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 3 binding sites of Mercury where determined in the SFC1-SFC7 Dimerization Module, PDB code: 4bjj:
Jump to Mercury binding site number: 1; 2; 3;

Mercury binding site 1 out of 3 in 4bjj

Go back to Mercury Binding Sites List in 4bjj
Mercury binding site 1 out of 3 in the SFC1-SFC7 Dimerization Module


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of SFC1-SFC7 Dimerization Module within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg1109

b:53.2
occ:1.00
SG A:CYS40 2.2 52.6 1.0
HA B:SER70 2.9 57.5 1.0
HA A:GLN41 3.0 43.5 1.0
O B:PRO69 3.1 34.4 1.0
HB3 A:CYS40 3.3 55.0 1.0
CB A:CYS40 3.4 45.8 1.0
HD2 A:PHE44 3.4 58.7 1.0
C A:CYS40 3.4 41.2 1.0
N A:GLN41 3.4 35.4 1.0
O A:CYS40 3.5 41.6 1.0
CA A:GLN41 3.7 36.3 1.0
H A:GLN41 3.7 42.5 1.0
CA B:SER70 3.8 48.0 1.0
C B:PRO69 3.8 36.5 1.0
HG13 B:VAL68 3.9 55.9 1.0
CD2 A:PHE44 3.9 48.9 1.0
HB2 A:GLN41 3.9 51.7 1.0
N B:SER70 4.0 43.1 1.0
CA A:CYS40 4.0 42.6 1.0
HE2 A:PHE44 4.0 54.4 1.0
HB2 A:CYS40 4.2 55.0 1.0
CE2 A:PHE44 4.3 45.4 1.0
CB A:GLN41 4.4 43.1 1.0
HB2 B:SER70 4.4 54.4 1.0
HB2 A:PHE44 4.5 53.8 1.0
HA A:CYS40 4.5 51.1 1.0
HG12 B:VAL68 4.5 55.9 1.0
H B:SER70 4.6 51.7 1.0
CG1 B:VAL68 4.7 46.6 1.0
O A:GLN37 4.7 49.4 1.0
CB B:SER70 4.7 45.3 1.0
C B:SER70 4.8 60.1 1.0
CG A:PHE44 4.9 50.6 1.0
HB3 A:GLN41 4.9 51.7 1.0
C A:GLN41 5.0 45.4 1.0
HB B:VAL68 5.0 47.4 1.0

Mercury binding site 2 out of 3 in 4bjj

Go back to Mercury Binding Sites List in 4bjj
Mercury binding site 2 out of 3 in the SFC1-SFC7 Dimerization Module


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of SFC1-SFC7 Dimerization Module within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg1101

b:0.3
occ:0.61
SG B:CYS84 2.0 89.1 0.7
HB2 B:CYS84 2.4 80.0 0.3
HB2 B:CYS84 2.6 81.3 0.7
HB3 B:CYS84 2.6 80.0 0.3
CB B:CYS84 2.8 67.7 0.7
CB B:CYS84 2.9 66.6 0.3
O B:CYS84 3.0 81.8 1.0
C B:CYS84 3.3 69.6 1.0
HB3 B:CYS84 3.6 81.3 0.7
CA B:CYS84 3.6 65.7 0.7
CA B:CYS84 3.7 66.1 0.3
HA B:LYS85 3.7 73.3 1.0
N B:LYS85 4.0 61.8 1.0
HG3 B:LYS85 4.1 96.5 1.0
HG2 B:LYS85 4.1 96.5 1.0
HA B:CYS84 4.1 78.9 0.7
HA B:CYS84 4.2 79.3 0.3
SG B:CYS84 4.3 63.1 0.3
CA B:LYS85 4.4 61.1 1.0
CG B:LYS85 4.5 80.4 1.0
H B:LYS85 4.5 74.2 1.0
HE22 B:GLN60 4.6 79.3 1.0
H B:CYS84 4.7 81.6 0.3
H B:CYS84 4.7 81.6 0.7
N B:CYS84 4.8 68.0 1.0

Mercury binding site 3 out of 3 in 4bjj

Go back to Mercury Binding Sites List in 4bjj
Mercury binding site 3 out of 3 in the SFC1-SFC7 Dimerization Module


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 3 of SFC1-SFC7 Dimerization Module within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg1101

b:0.5
occ:0.39
SG B:CYS84 2.5 63.1 0.3
HB1 A:ALA20 2.9 72.0 1.0
HB3 B:CYS84 3.1 81.3 0.7
HB2 B:CYS84 3.5 81.3 0.7
HB3 B:CYS84 3.7 80.0 0.3
CB B:CYS84 3.7 67.7 0.7
CB B:CYS84 3.7 66.6 0.3
H A:ALA20 3.8 65.3 1.0
CB A:ALA20 3.9 60.0 1.0
HB2 B:CYS84 3.9 80.0 0.3
HB2 A:ALA20 4.3 72.0 1.0
SG B:CYS84 4.3 89.1 0.7
HB3 A:ALA20 4.4 72.0 1.0
N A:ALA20 4.5 54.5 1.0
CA A:ALA20 4.5 63.1 1.0
C A:ALA20 4.5 69.9 1.0
O A:ALA20 4.6 77.6 1.0
HB B:THR10 4.6 0.5 1.0
HG13 B:VAL82 4.8 57.2 1.0
HG21 B:THR64 4.9 57.3 1.0
HG22 B:THR64 5.0 57.3 1.0

Reference:

N.M.I.Taylor, F.Baudin, G.Von Scheven, C.W.Muller. Rna Polymerase III-Specific General Transcription Factor Iiic Contains A Heterodimer Resembling Tfiif RAP30/RAP74. Nucleic Acids Res. V. 41 9183 2013.
ISSN: ISSN 0305-1048
PubMed: 23921640
DOI: 10.1093/NAR/GKT664
Page generated: Sun Dec 13 19:10:51 2020

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