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Mercury in PDB 4ct3: Methylmercury Chloride Derivative Structure of the Lytic Chapk Domain of the Endolysin Lysk From Staphylococcus Aureus Bacteriophage K

Protein crystallography data

The structure of Methylmercury Chloride Derivative Structure of the Lytic Chapk Domain of the Endolysin Lysk From Staphylococcus Aureus Bacteriophage K, PDB code: 4ct3 was solved by M.Sanz-Gaitero, R.Keary, C.Garcia-Doval, A.Coffey, M.J.Van Raaij, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 61.50 / 1.69
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 39.020, 61.520, 72.800, 91.80, 98.73, 90.01
R / Rfree (%) 18.074 / 22.407

Other elements in 4ct3:

The structure of Methylmercury Chloride Derivative Structure of the Lytic Chapk Domain of the Endolysin Lysk From Staphylococcus Aureus Bacteriophage K also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms
Calcium (Ca) 4 atoms

Mercury Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20;

Binding sites:

The binding sites of Mercury atom in the Methylmercury Chloride Derivative Structure of the Lytic Chapk Domain of the Endolysin Lysk From Staphylococcus Aureus Bacteriophage K (pdb code 4ct3). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 20 binding sites of Mercury where determined in the Methylmercury Chloride Derivative Structure of the Lytic Chapk Domain of the Endolysin Lysk From Staphylococcus Aureus Bacteriophage K, PDB code: 4ct3:
Jump to Mercury binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Mercury binding site 1 out of 20 in 4ct3

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Mercury binding site 1 out of 20 in the Methylmercury Chloride Derivative Structure of the Lytic Chapk Domain of the Endolysin Lysk From Staphylococcus Aureus Bacteriophage K


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Methylmercury Chloride Derivative Structure of the Lytic Chapk Domain of the Endolysin Lysk From Staphylococcus Aureus Bacteriophage K within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg1166

b:21.7
occ:0.67
HG A:CMH1166 0.0 21.7 0.7
CL A:CL1167 2.1 33.4 1.0
CM A:CMH1166 2.4 19.6 0.7
SG A:CMH1166 2.5 14.9 1.0
O A:HOH2094 2.9 19.7 1.0
O A:GLY116 3.3 14.9 1.0
O2S A:EPE1169 3.5 24.7 1.0
O3S A:EPE1169 3.5 26.4 1.0
CB A:CMH1166 3.5 15.2 1.0
C10 A:EPE1169 3.8 25.9 1.0
S A:EPE1169 3.8 26.7 1.0
ND1 A:HIS117 4.2 10.2 1.0
N A:CMH1166 4.3 14.8 1.0
C A:GLY116 4.3 14.2 1.0
CA A:HIS117 4.4 12.9 1.0
CA A:CMH1166 4.5 15.0 1.0
CB A:ALA76 4.5 17.8 1.0
O A:HOH2171 4.5 20.7 1.0
OE1 A:GLN53 4.5 24.6 1.0
N A:HIS117 4.8 12.8 1.0
N A:GLN55 4.9 14.7 1.0
C9 A:EPE1169 4.9 24.6 1.0
CB A:HIS117 5.0 12.2 1.0
CB A:TRP115 5.0 21.3 1.0

Mercury binding site 2 out of 20 in 4ct3

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Mercury binding site 2 out of 20 in the Methylmercury Chloride Derivative Structure of the Lytic Chapk Domain of the Endolysin Lysk From Staphylococcus Aureus Bacteriophage K


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of Methylmercury Chloride Derivative Structure of the Lytic Chapk Domain of the Endolysin Lysk From Staphylococcus Aureus Bacteriophage K within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg1171

b:50.2
occ:0.50
HG A:MMC1171 0.0 50.2 0.5
C A:MMC1171 2.4 47.1 0.5
O A:TRP64 2.8 15.6 1.0
NZ A:LYS3 2.9 21.8 1.0
OD1 A:ASP67 3.0 28.2 1.0
CE A:LYS3 3.3 20.4 1.0
CD1 A:TRP64 3.5 14.8 1.0
C A:TRP64 3.8 16.2 1.0
CA A:ASP67 3.8 23.6 1.0
NE1 A:TRP64 4.0 14.3 1.0
CG A:ASP67 4.0 27.2 1.0
CA A:TRP64 4.1 15.1 1.0
N A:ASP67 4.1 21.8 1.0
O2 A:GOL1168 4.1 37.3 1.0
CG A:TRP64 4.2 13.8 1.0
CB A:ASP67 4.5 25.0 1.0
O A:HOH2007 4.6 34.8 1.0
CB A:TRP64 4.7 15.1 1.0
CE2 A:TRP64 4.8 13.5 1.0
CD A:LYS3 4.8 19.9 1.0
O A:LEU63 4.8 16.9 1.0
CD2 A:TRP64 4.9 14.2 1.0
O A:HOH2002 4.9 30.7 1.0
C A:ASP67 4.9 22.5 1.0
N A:LEU65 5.0 15.9 1.0

Mercury binding site 3 out of 20 in 4ct3

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Mercury binding site 3 out of 20 in the Methylmercury Chloride Derivative Structure of the Lytic Chapk Domain of the Endolysin Lysk From Staphylococcus Aureus Bacteriophage K


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 3 of Methylmercury Chloride Derivative Structure of the Lytic Chapk Domain of the Endolysin Lysk From Staphylococcus Aureus Bacteriophage K within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg1172

b:74.7
occ:0.50
HG A:MMC1172 0.0 74.7 0.5
C A:MMC1172 2.4 67.6 0.5
ND1 A:HIS91 2.8 25.9 1.0
O A:HOH2143 3.0 37.2 1.0
O A:HOH2140 3.4 37.8 1.0
O A:ILE90 3.5 23.1 1.0
CE1 A:HIS91 3.7 26.4 1.0
CA A:HIS91 3.7 22.5 1.0
CG A:HIS91 3.8 23.6 1.0
O A:HOH2142 3.9 43.9 1.0
CB A:HIS91 4.0 23.4 1.0
C A:ILE90 4.3 22.5 1.0
N A:HIS91 4.4 22.1 1.0
NE2 A:HIS91 4.8 24.5 1.0
N A:GLU92 4.8 24.1 1.0
C A:HIS91 4.8 23.3 1.0
CD2 A:HIS91 4.9 25.8 1.0
O A:HOH2064 5.0 55.3 1.0

Mercury binding site 4 out of 20 in 4ct3

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Mercury binding site 4 out of 20 in the Methylmercury Chloride Derivative Structure of the Lytic Chapk Domain of the Endolysin Lysk From Staphylococcus Aureus Bacteriophage K


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 4 of Methylmercury Chloride Derivative Structure of the Lytic Chapk Domain of the Endolysin Lysk From Staphylococcus Aureus Bacteriophage K within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg1173

b:46.6
occ:0.50
N A:ALA2 2.5 27.4 1.0
O A:ALA2 2.8 22.2 1.0
CA A:ALA2 3.3 26.3 1.0
C A:ALA2 3.5 24.3 1.0
O A:HOH2212 3.5 45.8 1.0
CD A:LYS164 3.8 32.6 1.0
CB A:ALA2 3.9 26.1 1.0
O A:HOH2001 4.3 19.6 0.5
O A:HOH2003 4.3 23.1 1.0
O A:HOH2002 4.5 30.7 1.0
O A:HOH2007 4.5 34.8 1.0
CG A:LYS164 4.7 28.6 1.0
O A:HOH2102 4.7 36.8 1.0
CE A:LYS164 4.8 37.9 1.0
N A:LYS3 4.8 21.4 1.0
CB A:LYS164 5.0 29.8 1.0

Mercury binding site 5 out of 20 in 4ct3

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Mercury binding site 5 out of 20 in the Methylmercury Chloride Derivative Structure of the Lytic Chapk Domain of the Endolysin Lysk From Staphylococcus Aureus Bacteriophage K


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 5 of Methylmercury Chloride Derivative Structure of the Lytic Chapk Domain of the Endolysin Lysk From Staphylococcus Aureus Bacteriophage K within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg1174

b:59.7
occ:0.50
N A:SER111 2.3 24.3 1.0
CB A:SER111 2.6 30.2 1.0
CA A:SER111 2.9 25.9 1.0
C A:GLY110 3.5 23.6 1.0
C A:SER111 3.8 22.7 1.0
N A:TYR112 3.8 20.9 1.0
CA A:GLY110 3.8 23.1 1.0
CE2 A:TYR153 3.9 20.3 1.0
OG A:SER111 3.9 37.9 1.0
CZ C:TYR140 4.0 26.0 1.0
CE2 C:TYR140 4.0 25.5 1.0
CE1 C:TYR140 4.1 25.1 1.0
CD2 C:TYR140 4.1 24.1 1.0
CD1 C:TYR140 4.2 25.8 1.0
CG C:TYR140 4.2 22.8 1.0
CD2 A:TYR153 4.2 19.3 1.0
O A:SER109 4.3 19.2 1.0
O A:HOH2166 4.4 15.9 0.5
CD2 A:TYR112 4.4 17.8 1.0
O A:HOH2167 4.5 15.2 0.5
O A:GLY110 4.5 23.9 1.0
OH C:TYR140 4.6 26.6 1.0
O A:HOH2163 4.6 26.9 1.0
CE2 A:TYR112 4.6 18.8 1.0
O A:SER111 4.8 23.7 1.0
CG A:TYR112 4.9 17.5 1.0
N A:GLY110 4.9 21.9 1.0
CB C:TYR140 5.0 22.2 1.0
ND2 C:ASN142 5.0 17.7 1.0

Mercury binding site 6 out of 20 in 4ct3

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Mercury binding site 6 out of 20 in the Methylmercury Chloride Derivative Structure of the Lytic Chapk Domain of the Endolysin Lysk From Staphylococcus Aureus Bacteriophage K


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 6 of Methylmercury Chloride Derivative Structure of the Lytic Chapk Domain of the Endolysin Lysk From Staphylococcus Aureus Bacteriophage K within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg1166

b:20.7
occ:0.67
HG B:CMH1166 0.0 20.7 0.7
CL B:CL1167 2.0 26.6 1.0
CM B:CMH1166 2.4 18.6 0.7
SG B:CMH1166 2.5 16.4 1.0
O B:HOH2097 2.9 25.0 1.0
O B:GLY116 3.3 16.8 1.0
O1S B:EPE1168 3.4 32.4 1.0
CB B:CMH1166 3.5 15.5 1.0
O2S B:EPE1168 3.6 29.4 1.0
C10 B:EPE1168 3.8 30.9 1.0
S B:EPE1168 3.9 32.4 1.0
N B:CMH1166 4.2 15.7 1.0
ND1 B:HIS117 4.2 11.1 1.0
C B:GLY116 4.4 15.4 1.0
CA B:HIS117 4.4 13.3 1.0
CA B:CMH1166 4.5 15.1 1.0
OE1 B:GLN53 4.5 25.1 1.0
CB B:ALA76 4.5 16.5 1.0
O B:HOH2162 4.6 20.5 1.0
C9 B:EPE1168 4.7 27.7 1.0
N B:GLN55 4.9 13.7 1.0
N B:HIS117 4.9 13.8 1.0
CB B:HIS117 5.0 13.2 1.0
CB B:TRP115 5.0 21.6 1.0

Mercury binding site 7 out of 20 in 4ct3

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Mercury binding site 7 out of 20 in the Methylmercury Chloride Derivative Structure of the Lytic Chapk Domain of the Endolysin Lysk From Staphylococcus Aureus Bacteriophage K


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 7 of Methylmercury Chloride Derivative Structure of the Lytic Chapk Domain of the Endolysin Lysk From Staphylococcus Aureus Bacteriophage K within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg1170

b:68.3
occ:0.50
HG B:MMC1170 0.0 68.3 0.5
C B:MMC1170 2.4 61.3 0.5
ND1 B:HIS91 2.7 24.4 1.0
O B:HOH2139 3.2 29.4 1.0
O B:ILE90 3.5 22.2 1.0
CE1 B:HIS91 3.5 22.8 1.0
CG B:HIS91 3.7 21.7 1.0
CA B:HIS91 3.7 20.9 1.0
CB B:HIS91 3.9 21.4 1.0
C B:ILE90 4.3 21.4 1.0
N B:HIS91 4.4 21.2 1.0
NE2 B:HIS91 4.7 21.5 1.0
CD2 B:HIS91 4.8 21.9 1.0
O B:HOH2140 4.8 34.6 1.0
N B:GLU92 4.8 23.6 1.0
C B:HIS91 4.8 22.2 1.0

Mercury binding site 8 out of 20 in 4ct3

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Mercury binding site 8 out of 20 in the Methylmercury Chloride Derivative Structure of the Lytic Chapk Domain of the Endolysin Lysk From Staphylococcus Aureus Bacteriophage K


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 8 of Methylmercury Chloride Derivative Structure of the Lytic Chapk Domain of the Endolysin Lysk From Staphylococcus Aureus Bacteriophage K within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg1171

b:52.5
occ:0.50
HG B:MMC1171 0.0 52.5 0.5
C B:MMC1171 2.4 47.0 0.5
O B:TRP64 2.9 16.3 1.0
NZ B:LYS3 3.0 28.5 1.0
OD1 B:ASP67 3.1 31.9 1.0
CE B:LYS3 3.4 26.8 1.0
CD1 B:TRP64 3.5 15.1 1.0
C B:TRP64 3.9 16.9 1.0
NE1 B:TRP64 3.9 15.2 1.0
CA B:ASP67 4.0 24.7 1.0
CA B:TRP64 4.1 16.0 1.0
CG B:TRP64 4.2 14.6 1.0
CG B:ASP67 4.2 29.4 1.0
N B:ASP67 4.3 22.7 1.0
CB B:ASP67 4.6 27.0 1.0
O B:HOH2107 4.6 37.4 1.0
CB B:TRP64 4.7 15.9 1.0
CE2 B:TRP64 4.8 15.0 1.0
CD B:LYS3 4.9 27.3 1.0
O B:LEU63 4.9 17.6 1.0
CD2 B:TRP64 4.9 15.3 1.0
O B:HOH2060 5.0 44.0 1.0

Mercury binding site 9 out of 20 in 4ct3

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Mercury binding site 9 out of 20 in the Methylmercury Chloride Derivative Structure of the Lytic Chapk Domain of the Endolysin Lysk From Staphylococcus Aureus Bacteriophage K


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 9 of Methylmercury Chloride Derivative Structure of the Lytic Chapk Domain of the Endolysin Lysk From Staphylococcus Aureus Bacteriophage K within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg1172

b:56.3
occ:0.50
N B:ALA2 2.6 30.7 1.0
O B:ALA2 2.8 28.9 1.0
CA B:ALA2 3.5 28.9 1.0
C B:ALA2 3.5 28.1 1.0
CD B:LYS164 3.9 31.9 1.0
CB B:ALA2 4.0 28.8 1.0
O B:HOH2002 4.3 27.8 1.0
O B:HOH2001 4.3 35.8 1.0
CE B:LYS164 4.7 38.3 1.0
CG B:LYS164 4.8 28.6 1.0
N B:LYS3 4.8 26.1 1.0
NZ B:LYS164 4.9 40.7 1.0

Mercury binding site 10 out of 20 in 4ct3

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Mercury binding site 10 out of 20 in the Methylmercury Chloride Derivative Structure of the Lytic Chapk Domain of the Endolysin Lysk From Staphylococcus Aureus Bacteriophage K


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 10 of Methylmercury Chloride Derivative Structure of the Lytic Chapk Domain of the Endolysin Lysk From Staphylococcus Aureus Bacteriophage K within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg1173

b:86.3
occ:0.70
N B:SER111 2.5 22.7 1.0
CB B:SER111 2.8 27.8 1.0
CA B:SER111 3.1 24.6 1.0
C B:GLY110 3.5 22.6 1.0
CE1 B:TYR153 3.7 21.3 1.0
CA B:GLY110 3.8 22.2 1.0
N B:TYR112 3.9 21.0 1.0
C B:SER111 3.9 22.6 1.0
CD1 B:TYR153 4.0 21.0 1.0
OG B:SER111 4.2 33.6 1.0
O B:SER109 4.2 19.7 1.0
CD2 B:TYR112 4.3 17.6 1.0
CE2 B:TYR112 4.5 18.4 1.0
O B:GLY110 4.7 22.4 1.0
CG B:TYR112 4.8 18.4 1.0
N B:GLY110 4.9 22.2 1.0
CZ B:TYR153 4.9 23.3 1.0
C B:SER109 5.0 20.4 1.0

Reference:

M.Sanz-Gaitero, R.Keary, C.Garcia-Doval, A.Coffey, M.J.Van Raaij. Crystal Structure of the Lytic Chapk Domain of the Endolysin Lysk From Staphylococcus Aureus Bacteriophage K. Virol.J. V. 11 133 2014.
ISSN: ISSN 1743-422X
PubMed: 25064136
DOI: 10.1186/1743-422X-11-133
Page generated: Sun Dec 13 19:10:54 2020

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