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Mercury in PDB 4ebr: Crystal Structure of Autophagic E2, ATG10

Protein crystallography data

The structure of Crystal Structure of Autophagic E2, ATG10, PDB code: 4ebr was solved by S.B.Hong, B.W.Kim, J.H.Kim, H.K.Song, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.84 / 2.70
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 127.833, 127.833, 169.589, 90.00, 90.00, 120.00
R / Rfree (%) 21.1 / 25.1

Mercury Binding Sites:

The binding sites of Mercury atom in the Crystal Structure of Autophagic E2, ATG10 (pdb code 4ebr). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 2 binding sites of Mercury where determined in the Crystal Structure of Autophagic E2, ATG10, PDB code: 4ebr:
Jump to Mercury binding site number: 1; 2;

Mercury binding site 1 out of 2 in 4ebr

Go back to Mercury Binding Sites List in 4ebr
Mercury binding site 1 out of 2 in the Crystal Structure of Autophagic E2, ATG10


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Crystal Structure of Autophagic E2, ATG10 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg201

b:79.8
occ:0.61
SG A:CYS137 2.6 73.0 1.0
O A:ASP134 2.8 69.0 1.0
SG A:CYS133 2.8 85.0 1.0
CB A:CYS137 3.3 61.8 1.0
CB A:CYS133 3.8 83.2 1.0
C A:ASP134 4.0 70.5 1.0
CG2 A:ILE156 4.2 50.9 1.0
N A:CYS137 4.5 69.4 1.0
CA A:CYS137 4.5 67.5 1.0
N A:ASP134 4.6 81.6 1.0
C A:CYS133 4.8 81.1 1.0
CD1 A:ILE156 4.9 52.9 1.0
CA A:THR135 4.9 61.9 1.0
CA A:CYS133 4.9 80.7 1.0
N A:THR135 4.9 66.5 1.0
CA A:ASP134 4.9 78.4 1.0

Mercury binding site 2 out of 2 in 4ebr

Go back to Mercury Binding Sites List in 4ebr
Mercury binding site 2 out of 2 in the Crystal Structure of Autophagic E2, ATG10


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of Crystal Structure of Autophagic E2, ATG10 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg201

b:82.7
occ:0.61
SG B:CYS137 2.6 66.0 1.0
SG B:CYS133 3.0 96.2 1.0
CB B:CYS133 3.0 54.9 1.0
O B:ASP134 3.1 62.0 1.0
CB B:CYS137 3.3 50.7 1.0
C B:ASP134 3.9 57.3 1.0
N B:ASP134 3.9 62.7 1.0
CG2 B:ILE156 4.1 40.5 1.0
C B:CYS133 4.2 62.3 1.0
CA B:CYS133 4.2 60.1 1.0
CA B:ASP134 4.6 58.0 1.0
CA B:CYS137 4.6 50.0 1.0
N B:CYS137 4.7 51.5 1.0
N B:THR135 4.8 56.8 1.0
CE2 B:PHE157 4.9 60.4 1.0
O B:CYS133 4.9 63.0 1.0

Reference:

S.B.Hong, B.W.Kim, J.H.Kim, H.K.Song. Structure of the Autophagic E2 Enzyme ATG10 Acta Crystallogr.,Sect.D V. 68 1409 2012.
ISSN: ISSN 0907-4449
PubMed: 22993095
DOI: 10.1107/S0907444912034166
Page generated: Sun Dec 13 19:11:00 2020

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