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Mercury in PDB 4ofy: Crystal Structure of the Complex of Syg-1 D1-D2 and Syg-2 D1-D4

Protein crystallography data

The structure of Crystal Structure of the Complex of Syg-1 D1-D2 and Syg-2 D1-D4, PDB code: 4ofy was solved by E.Ozkan, K.C.Garcia, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.06 / 3.30
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 286.786, 116.144, 98.032, 90.00, 107.62, 90.00
R / Rfree (%) 25.9 / 30.6

Mercury Binding Sites:

The binding sites of Mercury atom in the Crystal Structure of the Complex of Syg-1 D1-D2 and Syg-2 D1-D4 (pdb code 4ofy). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 3 binding sites of Mercury where determined in the Crystal Structure of the Complex of Syg-1 D1-D2 and Syg-2 D1-D4, PDB code: 4ofy:
Jump to Mercury binding site number: 1; 2; 3;

Mercury binding site 1 out of 3 in 4ofy

Go back to Mercury Binding Sites List in 4ofy
Mercury binding site 1 out of 3 in the Crystal Structure of the Complex of Syg-1 D1-D2 and Syg-2 D1-D4


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Crystal Structure of the Complex of Syg-1 D1-D2 and Syg-2 D1-D4 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Hg1508

b:0.4
occ:1.00
HG D:EMC1508 0.0 0.4 1.0
SG D:CYS391 2.4 84.3 1.0
C1 D:EMC1508 2.5 0.6 1.0
C2 D:EMC1508 3.3 0.5 1.0
CB D:CYS391 3.4 86.8 1.0
OE1 D:GLN351 4.1 0.6 1.0
CD D:GLN351 4.5 0.1 1.0
CA D:CYS391 4.8 78.3 1.0
CG D:GLN351 4.8 82.2 1.0

Mercury binding site 2 out of 3 in 4ofy

Go back to Mercury Binding Sites List in 4ofy
Mercury binding site 2 out of 3 in the Crystal Structure of the Complex of Syg-1 D1-D2 and Syg-2 D1-D4


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of Crystal Structure of the Complex of Syg-1 D1-D2 and Syg-2 D1-D4 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Hg1508

b:0.3
occ:0.73
HG E:EMC1508 0.0 0.3 0.7
C1 E:EMC1508 2.5 0.7 0.7
SG E:CYS391 2.5 0.6 1.0
C2 E:EMC1508 3.3 0.5 0.7
CB E:CYS391 3.4 0.2 1.0
OE1 E:GLN351 3.9 0.7 1.0
CD E:GLN351 4.4 0.7 1.0
CG E:GLN351 4.7 94.4 1.0
CA E:CYS391 4.7 93.9 1.0

Mercury binding site 3 out of 3 in 4ofy

Go back to Mercury Binding Sites List in 4ofy
Mercury binding site 3 out of 3 in the Crystal Structure of the Complex of Syg-1 D1-D2 and Syg-2 D1-D4


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 3 of Crystal Structure of the Complex of Syg-1 D1-D2 and Syg-2 D1-D4 within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Hg1508

b:0.3
occ:1.00
HG F:EMC1508 0.0 0.3 1.0
SG F:CYS391 2.4 0.8 1.0
C1 F:EMC1508 2.5 0.4 1.0
CB F:CYS391 2.9 0.3 1.0
C2 F:EMC1508 3.3 0.9 1.0
CA F:CYS391 4.2 0.1 1.0
OE1 F:GLN351 4.5 0.6 1.0
ND2 F:ASN349 4.7 0.5 1.0
CG F:GLN351 4.9 99.3 1.0
CD F:GLN351 4.9 0.4 1.0
N F:CYS391 5.0 0.0 1.0

Reference:

E.Ozkan, P.H.Chia, R.R.Wang, N.Goriatcheva, D.Borek, Z.Otwinowski, T.Walz, K.Shen, K.C.Garcia. Extracellular Architecture of the Syg-1/Syg-2 Adhesion Complex Instructs Synaptogenesis. Cell(Cambridge,Mass.) V. 156 482 2014.
ISSN: ISSN 0092-8674
PubMed: 24485456
DOI: 10.1016/J.CELL.2014.01.004
Page generated: Sun Dec 13 19:11:34 2020

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