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Mercury in PDB 4r14: Crystal Structure of Human CSN6 Mpn Domain

Protein crystallography data

The structure of Crystal Structure of Human CSN6 Mpn Domain, PDB code: 4r14 was solved by T.Jiang, M.Xu, X.L.Ma, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.68 / 2.60
Space group P 32
Cell size a, b, c (Å), α, β, γ (°) 66.552, 66.552, 86.829, 90.00, 90.00, 120.00
R / Rfree (%) 22.5 / 25.9

Mercury Binding Sites:

The binding sites of Mercury atom in the Crystal Structure of Human CSN6 Mpn Domain (pdb code 4r14). This binding sites where shown within 5.0 Angstroms radius around Mercury atom.
In total 8 binding sites of Mercury where determined in the Crystal Structure of Human CSN6 Mpn Domain, PDB code: 4r14:
Jump to Mercury binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Mercury binding site 1 out of 8 in 4r14

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Mercury binding site 1 out of 8 in the Crystal Structure of Human CSN6 Mpn Domain


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 1 of Crystal Structure of Human CSN6 Mpn Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg301

b:65.5
occ:0.23
SG A:CYS143 2.5 92.7 1.0
O A:GLU147 3.1 72.5 1.0
CB A:CYS143 3.5 39.5 1.0
CD A:PRO149 3.6 68.3 1.0
CA A:SER148 4.2 59.5 1.0
C A:GLU147 4.2 70.3 1.0
NE2 A:HIS139 4.4 40.0 1.0
CA A:CYS143 4.4 38.5 1.0
CG A:PRO149 4.4 65.6 1.0
CD2 A:HIS139 4.6 38.4 1.0
OG A:SER148 4.6 63.3 1.0
N A:PRO149 4.6 67.1 1.0
N A:SER148 4.7 46.0 1.0
C A:SER148 4.9 57.6 1.0
CB A:SER148 4.9 48.6 1.0
HG A:HG302 5.0 60.5 0.3

Mercury binding site 2 out of 8 in 4r14

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Mercury binding site 2 out of 8 in the Crystal Structure of Human CSN6 Mpn Domain


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 2 of Crystal Structure of Human CSN6 Mpn Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg302

b:60.5
occ:0.26
SG A:CYS143 2.5 92.7 1.0
O A:CYS143 3.0 54.2 1.0
CB A:CYS143 3.1 39.5 1.0
C A:CYS143 3.2 48.7 1.0
CA A:CYS143 3.8 38.5 1.0
N A:GLU144 3.8 37.7 1.0
O A:LYS140 4.0 46.4 1.0
CA A:GLU144 4.2 44.3 1.0
CG A:GLU144 4.3 57.0 1.0
CB A:GLU144 4.8 47.5 1.0
N A:CYS143 4.9 36.5 1.0
HG A:HG301 5.0 65.5 0.2

Mercury binding site 3 out of 8 in 4r14

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Mercury binding site 3 out of 8 in the Crystal Structure of Human CSN6 Mpn Domain


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 3 of Crystal Structure of Human CSN6 Mpn Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg303

b:35.9
occ:0.17
NE2 A:HIS54 2.7 22.4 1.0
CE1 A:HIS54 3.4 27.8 1.0
OE1 A:GLU88 3.6 60.9 1.0
CD2 A:HIS54 3.8 25.4 1.0
CG A:GLU88 3.8 61.3 1.0
SD A:MET58 4.1 35.8 1.0
CD A:GLU88 4.2 71.8 1.0
CB A:GLU88 4.5 35.2 1.0
O A:LEU89 4.5 23.5 1.0
CG A:MET58 4.5 23.1 1.0
ND1 A:HIS54 4.6 23.3 1.0
CG A:HIS54 4.8 22.9 1.0
CE A:MET58 4.8 23.4 1.0
O A:ILE69 5.0 24.1 1.0

Mercury binding site 4 out of 8 in 4r14

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Mercury binding site 4 out of 8 in the Crystal Structure of Human CSN6 Mpn Domain


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 4 of Crystal Structure of Human CSN6 Mpn Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hg304

b:39.8
occ:0.12
O A:LEU119 2.9 66.6 1.0
O A:PHE116 3.3 52.2 1.0
C A:LEU119 3.7 57.1 1.0
CB A:PHE116 3.9 53.5 1.0
CA A:GLU120 4.0 43.1 1.0
N A:GLU120 4.1 48.5 1.0
C A:PHE116 4.3 56.4 1.0
C A:GLU120 4.5 44.9 1.0
N A:PHE121 4.6 41.5 1.0
CA A:LEU119 4.8 57.0 1.0
OE1 A:GLU109 4.8 47.7 1.0
CA A:PHE116 4.8 55.3 1.0
CG A:PHE116 4.8 52.6 1.0
CD2 A:PHE116 4.9 46.4 1.0
CB A:LEU119 4.9 46.4 1.0

Mercury binding site 5 out of 8 in 4r14

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Mercury binding site 5 out of 8 in the Crystal Structure of Human CSN6 Mpn Domain


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 5 of Crystal Structure of Human CSN6 Mpn Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg301

b:51.9
occ:0.19
SG B:CYS143 2.5 98.2 1.0
O B:GLU147 3.1 66.8 1.0
CD B:PRO149 3.4 66.2 1.0
CB B:CYS143 3.5 38.7 1.0
CA B:SER148 4.2 63.7 1.0
C B:GLU147 4.2 70.0 1.0
CG B:PRO149 4.3 63.8 1.0
NE2 B:HIS139 4.3 43.8 1.0
CA B:CYS143 4.4 37.7 1.0
CD2 B:HIS139 4.5 37.5 1.0
N B:PRO149 4.6 65.3 1.0
N B:SER148 4.7 45.2 1.0
OG B:SER148 4.8 60.9 1.0
C B:SER148 4.9 59.2 1.0
HG B:HG302 5.0 55.2 0.2

Mercury binding site 6 out of 8 in 4r14

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Mercury binding site 6 out of 8 in the Crystal Structure of Human CSN6 Mpn Domain


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 6 of Crystal Structure of Human CSN6 Mpn Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg302

b:55.2
occ:0.23
SG B:CYS143 2.5 98.2 1.0
O B:CYS143 3.1 44.3 1.0
CB B:CYS143 3.1 38.7 1.0
C B:CYS143 3.3 38.2 1.0
CA B:CYS143 3.8 37.7 1.0
N B:GLU144 3.8 40.1 1.0
O B:LYS140 3.9 48.4 1.0
CA B:GLU144 4.3 38.6 1.0
CG B:GLU144 4.4 53.4 1.0
N B:CYS143 4.9 35.7 1.0
CB B:GLU144 4.9 46.1 1.0
C B:LYS140 5.0 41.4 1.0
HG B:HG301 5.0 51.9 0.2

Mercury binding site 7 out of 8 in 4r14

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Mercury binding site 7 out of 8 in the Crystal Structure of Human CSN6 Mpn Domain


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 7 of Crystal Structure of Human CSN6 Mpn Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg303

b:34.5
occ:0.18
NE2 B:HIS54 2.6 22.5 1.0
CE1 B:HIS54 3.4 23.8 1.0
CD2 B:HIS54 3.7 26.6 1.0
OE1 B:GLU88 3.7 62.0 1.0
CG B:GLU88 4.0 63.1 1.0
SD B:MET58 4.1 35.5 1.0
CD B:GLU88 4.3 73.4 1.0
CG B:MET58 4.4 30.3 1.0
O B:LEU89 4.5 23.2 1.0
CB B:GLU88 4.5 39.0 1.0
ND1 B:HIS54 4.6 25.1 1.0
CG B:HIS54 4.8 22.8 1.0
CE B:MET58 4.8 24.9 1.0
O B:ILE69 4.9 23.8 1.0
CG1 B:VAL68 5.0 22.7 1.0

Mercury binding site 8 out of 8 in 4r14

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Mercury binding site 8 out of 8 in the Crystal Structure of Human CSN6 Mpn Domain


Mono view


Stereo pair view

A full contact list of Mercury with other atoms in the Hg binding site number 8 of Crystal Structure of Human CSN6 Mpn Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hg304

b:39.4
occ:0.13
O B:LEU119 3.0 70.9 1.0
O B:PHE116 3.3 52.8 1.0
C B:LEU119 3.7 66.5 1.0
CB B:PHE116 3.9 57.5 1.0
CA B:GLU120 3.9 42.8 1.0
N B:GLU120 4.1 43.4 1.0
C B:PHE116 4.3 58.8 1.0
C B:GLU120 4.4 43.7 1.0
N B:PHE121 4.5 45.9 1.0
OE2 B:GLU109 4.7 49.9 1.0
CA B:LEU119 4.8 61.0 1.0
CA B:PHE116 4.8 57.5 1.0
CG B:PHE116 4.9 50.7 1.0
CB B:LEU119 4.9 59.5 1.0
CD2 B:PHE116 4.9 46.3 1.0
O B:GLU120 5.0 42.9 1.0

Reference:

X.L.Ma, M.Xu, T.Jiang. Crystal Structure of the Human CSN6 Mpn Domain Biochem.Biophys.Res.Commun. V. 453 25 2014.
ISSN: ISSN 0006-291X
PubMed: 25242525
DOI: 10.1016/J.BBRC.2014.09.046
Page generated: Sun Dec 13 19:11:54 2020

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